CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.4491s0013
(
Capsella grandiflora
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Cagra.4491s0013
T142678_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G49930
M06814_2.00
Arabidopsis thaliana
DGATTTC
GAAATCH
Dap-seq
OMalley et al.(2016)
AT3G49930_col_a
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.4491s0013.1.p
C2H2 ZF
89
111
YKCSVCGKSFPSYQALGGHKTSH
Links
Other
C2H2 ZF
family TFs
Other
Capsella grandiflora
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy