Carubv10002559m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10002559m.g T142694_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP2
M06820_2.00
Arabidopsis thaliana
YAGATAHMACCTNHNHND

HNDNDNAGGTKDTATCTR
Dap-seq
OMalley et al.(2016)
At5g22890_col_a
0.827 0.977
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002559m C2H2 ZF 301 323
Carubv10002559m C2H2 ZF 324 353

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh1_pm.C_scaffold_6001805 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001805 I 0.827
STOP2 Arabidopsis thaliana AT5G22890 D 0.827
Bostr.10199s0156 Boechera stricta Bostr.10199s0156 I 0.807
Bo2g024530 Brassica oleracea Bo2g024530 I 0.827
Bo2g024540 Brassica oleracea Bo2g024540 I 0.827
Bo9g148080 Brassica oleracea Bo9g148080 I 0.827
Bo9g148110 Brassica oleracea Bo9g148110 I 0.807
Bra002438 Brassica rapa Bra002438 I 0.822
Cagra.3954s0025 Capsella grandiflora Cagra.3954s0025 I 0.827
Thhalv10013882m.g Eutrema salsugineum Thhalv10013882m.g I 0.827