Carubv10012013m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10012013m.g T142715_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012013m C2H2 ZF 188 210
Carubv10012013m C2H2 ZF 209 235

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

265 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27810.m000651 Ricinus communis 27810.m000651 N 0.787
30055.m001542 Ricinus communis 30055.m001542 N 0.758
30061.m000294 Ricinus communis 30061.m000294 N 0.764
30169.m006417 Ricinus communis 30169.m006417 N 0.778
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.787
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.797
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.758
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.758
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.797
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.758
WIP6 Arabidopsis thaliana AT1G13290 N 0.827
WIP2 Arabidopsis thaliana AT3G57670 N 0.787
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.756
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.773
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.784
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.788
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.767
Bo4g111000 Brassica oleracea Bo4g111000 N 0.787
Bo5g015200 Brassica oleracea Bo5g015200 N 0.827
Bo6g073120 Brassica oleracea Bo6g073120 N 0.787
Bo8g092070 Brassica oleracea Bo8g092070 N 0.787
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.827
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.787
Bra003295 Brassica rapa Bra003295 N 0.787
Bra007346 Brassica rapa Bra007346 N 0.786
Bra014612 Brassica rapa Bra014612 N 0.787
Bra019822 Brassica rapa Bra019822 N 0.827
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.773
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.756
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.767
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.788
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.761
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.787
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.827
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.787
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.758
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.758
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.773
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.787
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.758
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.787
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.797
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.778
Ca_07051 Cicer arietinum Ca_07051 N 0.758
Ca_07269 Cicer arietinum Ca_07269 N 0.787
Ca_08435 Cicer arietinum Ca_08435 N 0.797
Ca_21713 Cicer arietinum Ca_21713 N 0.797
Ca_24699 Cicer arietinum Ca_24699 N 0.797
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.787
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.797
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.787
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.787
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.758
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.788
Cla002714 Citrullus lanatus Cla002714 N 0.797
Cla008187 Citrullus lanatus Cla008187 N 0.787
Cla008675 Citrullus lanatus Cla008675 N 0.787
Cla015481 Citrullus lanatus Cla015481 N 0.758
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.758
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.758
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.787
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.797
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.787
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.787
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.797
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.758
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.797
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.767
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.758
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.797
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.787
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.797
F775_11193 Aegilops tauschii F775_11193 N 0.756
F775_14972 Aegilops tauschii F775_14972 N 0.761
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.787
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.788
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.787
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.787
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.758
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.797
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.797
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.787
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.758
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.803
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.758
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.758
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.758
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.758
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.758
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.758
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.758
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.787
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.803
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.758
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.787
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.787
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.758
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.758
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.758
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.787
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.758
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.797
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.797
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.797
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.767
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.761
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.788
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.773
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.773
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.767
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.768
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.758
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.778
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.797
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.768
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.782
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.778
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.764
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.764
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.787
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.787
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.797
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.756
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.773
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.767
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.788
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.767
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.758
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.758
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.797
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.788
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.788
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.797
MDP0000131949 Malus domestica MDP0000131949 N 0.758
MDP0000300013 Malus domestica MDP0000300013 N 0.758
MDP0000303483 Malus domestica MDP0000303483 N 0.797
MDP0000403797 Malus domestica MDP0000403797 N 0.787
MDP0000580545 Malus domestica MDP0000580545 N 0.787
MDP0000601705 Malus domestica MDP0000601705 N 0.787
MDP0000899280 Malus domestica MDP0000899280 N 0.788
mgf019910m Mimulus guttatus mgf019910m N 0.787
mgf022319m Mimulus guttatus mgf022319m N 0.764
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.761
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.788
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.797
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.797
OB06G28740 Oryza brachyantha OB06G28740 N 0.773
OB08G26650 Oryza brachyantha OB08G26650 N 0.767
OBART01G37960 Oryza barthii OBART01G37960 N 0.756
OBART02G07320 Oryza barthii OBART02G07320 N 0.770
OBART06G20890 Oryza barthii OBART06G20890 N 0.797
OBART08G19670 Oryza barthii OBART08G19670 N 0.767
OBART09G03640 Oryza barthii OBART09G03640 N 0.784
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.756
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.773
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.767
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.784
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.788
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.767
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.756
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.767
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.784
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.788
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.767
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.784
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.756
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.773
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.788
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.767
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.767
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.756
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.773
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.767
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.784
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.788
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.767
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.787
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.759
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.758
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.787
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.788
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.756
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N 0.770
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.773
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.767
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.767
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.784
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.756
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.773
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.784
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.788
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.767
OS01G0859100 Oryza sativa OS01G0859100 N 0.756
OS06G0612300 Oryza sativa OS06G0612300 N 0.773
OS08G0504000 Oryza sativa OS08G0504000 N 0.767
OS09G0307400 Oryza sativa OS09G0307400 N 0.788
OS09G0485600 Oryza sativa OS09G0485600 N 0.767
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.761
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.788
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.773
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.767
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.767
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.758
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.787
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.787
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.787
PK03705.1 Cannabis sativa PK03705.1 N 0.787
PK05257.1 Cannabis sativa PK05257.1 N 0.776
Pm000471 Prunus mume Pm000471 N 0.787
Pm001374 Prunus mume Pm001374 N 0.758
Pm025853 Prunus mume Pm025853 N 0.787
Pm029018 Prunus mume Pm029018 N 0.797
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.758
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.778
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.758
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.758
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.758
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.797
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.787
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.787
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.797
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.758
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.787
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.778
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.787
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.758
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.758
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.767
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.788
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.761
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.767
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.773
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.797
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.797
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.797
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.797
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.797
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.797
Si006616m.g Setaria italica Si006616m.g N 0.773
Si013819m.g Setaria italica Si013819m.g N 0.767
Si029897m.g Setaria italica Si029897m.g N 0.761
Si030360m.g Setaria italica Si030360m.g N 0.788
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.787
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.787
TCM_005892 Theobroma cacao TCM_005892 N 0.758
TCM_011858 Theobroma cacao TCM_011858 N 0.797
TCM_024788 Theobroma cacao TCM_024788 N 0.787
TCM_040610 Theobroma cacao TCM_040610 N 0.797
TCM_041441 Theobroma cacao TCM_041441 N 0.758
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.787
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.827
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.756
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.788
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.761
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.761
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.788
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.797
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.761
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.797
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.761
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.788
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.797
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.763
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.758
NTT Vitis vinifera VIT_08s0007g08070 N 0.787