Carubv10012266m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10012266m.g T142716_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012266m C2H2 ZF 222 243
Carubv10012266m C2H2 ZF 242 268

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.821
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.821
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.815
Bra031621 Brassica rapa Bra031621 N 0.800
Bra018638 Brassica rapa Bra018638 N 0.800
Bo8g112550 Brassica oleracea Bo8g112550 N 0.800
Bo5g008880 Brassica oleracea Bo5g008880 N 0.800
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.797
Ca_27078 Cicer arietinum Ca_27078 N 0.797
29908.m006047 Ricinus communis 29908.m006047 N 0.797
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.797
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.797
mgf022981m Mimulus guttatus mgf022981m N 0.796
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.796
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.791
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.791
TT1 Vitis vinifera VIT_18s0001g05860 N 0.791
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.791
TCM_034881 Theobroma cacao TCM_034881 N 0.791
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.791
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.791
WIP3 Arabidopsis thaliana AT1G08290 N 0.790
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.790
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.790
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.790
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.790
MDP0000573922 Malus domestica MDP0000573922 N 0.789
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.788
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.788
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.788
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.788
TCM_005892 Theobroma cacao TCM_005892 N 0.784
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.784
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.784
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.784
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.784
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.784
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.784
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.784
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.782
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.782
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.782
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.782
MDP0000144266 Malus domestica MDP0000144266 N 0.779
Cla015481 Citrullus lanatus Cla015481 N 0.778
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.778
mgf022319m Mimulus guttatus mgf022319m N 0.778
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.778
Bo5g081360 Brassica oleracea Bo5g081360 N 0.778
30061.m000294 Ricinus communis 30061.m000294 N 0.778
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.778
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.778
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.778
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.778
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.778
MDP0000142494 Malus domestica MDP0000142494 N 0.777
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.774
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.774
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.774
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.774
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.774
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.774
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.773
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.772
Cla000184 Citrullus lanatus Cla000184 N 0.772
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.772
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.772
Cla002714 Citrullus lanatus Cla002714 N 0.768
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.768
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.768
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.768
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.768
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.768
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.768
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.768
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.768
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.768
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.768
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.768
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.768
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.768
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.768
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.768
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.768
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.768
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.768
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.768
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.768
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.768
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.768
OBART08G19670 Oryza barthii OBART08G19670 N 0.768
OB08G26650 Oryza brachyantha OB08G26650 N 0.768
OS08G0504000 Oryza sativa OS08G0504000 N 0.768
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.768
Si029897m.g Setaria italica Si029897m.g N 0.768
Si013819m.g Setaria italica Si013819m.g N 0.768
OS09G0485600 Oryza sativa OS09G0485600 N 0.768
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.768
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.768
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.768
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.768
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.768
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.768
F775_14972 Aegilops tauschii F775_14972 N 0.768
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.768
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.768
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.768
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.764
PK05257.1 Cannabis sativa PK05257.1 N 0.758
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.758
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.758
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.758
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.758
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.758
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.758
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.758
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.758
MDP0000300013 Malus domestica MDP0000300013 N 0.758
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.758
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.758
TCM_041441 Theobroma cacao TCM_041441 N 0.758
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.758
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.758
30055.m001542 Ricinus communis 30055.m001542 N 0.758
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.758
Pm001374 Prunus mume Pm001374 N 0.758
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.758
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.758
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.758
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.758
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.758
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.758
Ca_07051 Cicer arietinum Ca_07051 N 0.758
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.758
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.758
MDP0000131949 Malus domestica MDP0000131949 N 0.758