Carubv10015875m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10015875m.g T142719_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G15740
M06810_2.00
Arabidopsis thaliana
WCGHHDYCGWY

RWCGRHDDCGW
Dap-seq
OMalley et al.(2016)
AT2G15740_col_a
0.827 0.957
AT5G22990
M06821_2.00
Arabidopsis thaliana
WCGWHDTCGWYNHNN

NNDNRWCGAHDWCGW
Dap-seq
OMalley et al.(2016)
AT5G22990_col_a
0.825 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015875m C2H2 ZF 247 269

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

Invalid Input OrderBy

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action