Carubv10016477m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10016477m.g T142721_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.827 0.870
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.825 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016477m C2H2 ZF 88 110

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G15740 Arabidopsis thaliana AT2G15740 D 0.827
scaffold_303767.1 Arabidopsis lyrata scaffold_303767.1 I 0.827
Thhalv10023174m.g Eutrema salsugineum Thhalv10023174m.g I 0.827
Cagra.6034s0007 Capsella grandiflora Cagra.6034s0007 I 0.827
Carubv10015875m.g Capsella rubella Carubv10015875m.g I 0.827
Bra039606 Brassica rapa Bra039606 I 0.827
Cagra.3954s0034 Capsella grandiflora Cagra.3954s0034 I 0.825
Carubv10002800m.g Capsella rubella Carubv10002800m.g I 0.825
Thhalv10015522m.g Eutrema salsugineum Thhalv10015522m.g I 0.825
scaffold_602360.1 Arabidopsis lyrata scaffold_602360.1 I 0.825
AT5G22990 Arabidopsis thaliana AT5G22990 D 0.825
AT2G18490 Arabidopsis thaliana AT2G18490 I 0.825
Bostr.10199s0147 Boechera stricta Bostr.10199s0147 I 0.825
Bo7g010020 Brassica oleracea Bo7g010020 I 0.825
Bo9g147060 Brassica oleracea Bo9g147060 I 0.825
Carubv10025077m.g Capsella rubella Carubv10025077m.g I 0.805
Carubv10027554m.g Capsella rubella Carubv10027554m.g I 0.805
Bostr.18351s0050 Boechera stricta Bostr.18351s0050 I 0.805
Cagra.0604s0001 Capsella grandiflora Cagra.0604s0001 I 0.805
Cagra.2968s0004 Capsella grandiflora Cagra.2968s0004 I 0.805
AT5G42640 Arabidopsis thaliana AT5G42640 I 0.795
Carubv10015674m.g Capsella rubella Carubv10015674m.g I 0.768