Carubv10016578m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10016578m.g T142722_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REF6
M08081_2.00 		Arabidopsis thaliana
DNCTCTGTTTY
RAAACAGAGNH		 ChIP-seq
Mathelier et al.(2014)
MA1415.1 		0.811 0.944
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016578m C2H2 ZF 1280 1303
Carubv10016578m C2H2 ZF 1304 1327
Carubv10016578m C2H2 ZF 1333 1357
Carubv10016578m C2H2 ZF 1363 1389

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

Invalid Input OrderBy

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action