Carubv10016861m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10016861m.g T142723_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.827 1.000
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.827 1.000
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.827 0.953
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.827 0.953
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.822 0.930
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.822 0.930
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.822 0.930
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.822 0.930
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.798 0.907
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.798 0.907
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.792 0.907
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.788 0.907
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.788 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016860m C2H2 ZF 157 178
Carubv10016860m C2H2 ZF 177 203
Carubv10016861m C2H2 ZF 157 178
Carubv10016861m C2H2 ZF 177 203

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

668 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_03114 Capronia coronata A1O1_03114 I 0.000
A1O3_01974 Capronia epimyces A1O3_01974 I 0.000
A1O5_03439 Cladophialophora psammophila A1O5_03439 I 0.000
A1O7_04367 Cladophialophora yegresii A1O7_04367 I 0.000
A1O9_00612 Exophiala aquamarina A1O9_00612 I 0.000
ACLA_039140 Aspergillus clavatus CADACLAG00003633 N 0.000
AFUA_3G11250 Aspergillus fumigatus CADAFUAG00005698 I 0.000
ANIA_04873 Aspergillus nidulans CADANIAG00005532 I 0.000
ATEG_04658 Aspergillus terreus CADATEAG00009335 I 0.000
BBA_01304 Beauveria bassiana BBA_01304 I 0.000
BDDG_07547 Blastomyces dermatitidis BDDG_07547 N 0.000
CADAFLAG00002515 Aspergillus flavus CADAFLAG00002515 I 0.000
CADANGAG00002216 Aspergillus niger CADANGAG00002216 I 0.000
CADAORAG00001279 Aspergillus oryzae CADAORAG00001279 I 0.000
CCM_01294 Cordyceps militaris CCM_01294 I 0.000
CFIO01_07503 Colletotrichum fioriniae CFIO01_07503 I 0.000
CGGC5_13371 Colletotrichum gloeosporioides CGGC5_13371 I 0.000
CH063_01293 Colletotrichum higginsianum CH063_01293 I 0.000
CIMG_03820 Coccidioides immitis CIMG_03820 N 0.000
CMQ_5441 Grosmannia clavigera CMQ_5441 I 0.000
Cob_06009 Colletotrichum orbiculare Cob_06009 I 0.000
CPC735_005020 Coccidioides posadasii CPC735_005020 N 0.000
CSUB01_04252 Colletotrichum sublineola CSUB01_04252 I 0.000
CTHT_0018750 Chaetomium thermophilum CTHT_0018750 I 0.000
EPUS_07921 Endocarpon pusillum EPUS_07921 I 0.000
EURHEDRAFT_515807 Aspergillus ruber EURHEDRAFT_515807 I 0.000
e_gw1.00866.172.1 Aspergillus carbonarius e_gw1.00866.172.1 I 0.000
e_gw1.3.1240.1 Nectria haematococca e_gw1.3.1240.1 I 0.000
FFUJ_13548 Fusarium fujikuroi FFUJ_13548 I 0.000
FGRRES_06311 Fusarium graminearum FGRRES_06311 I 0.000
FOXG_08063 Fusarium oxysporum FOXG_08063 I 0.000
FPSE_01182 Fusarium pseudograminearum FPSE_01182 I 0.000
FVEG_04985 Fusarium verticillioides FVEG_04985 I 0.000
G647_04328 Cladophialophora carrionii G647_04328 I 0.000
GGTG_05592 Gaeumannomyces graminis GGTG_05592 I 0.000
GLRG_01973 Colletotrichum graminicola GLRG_01973 I 0.000
H101_04757 Trichophyton interdigitale H101_04757 N 0.000
H102_07608 Trichophyton rubrum H102_07608 N 0.000
H105_07634 Trichophyton soudanense H105_07634 N 0.000
HCBG_07403 Histoplasma capsulatum HCBG_07403 N 0.000
HMPREF1120_06603 Exophiala dermatitidis HMPREF1120_06603 I 0.000
HMPREF1541_09309 Cyphellophora europaea HMPREF1541_09309 I 0.000
HMPREF1624_02827 Sporothrix schenckii HMPREF1624_02827 I 0.000
MAC_04654 Metarhizium acridum MAC_04654 I 0.000
MAJ_07370 Metarhizium majus MAJ_07370 I 0.000
MAM_00034 Metarhizium album MAM_00034 I 0.000
MANI_117684 Metarhizium anisopliae MANI_117684 I 0.000
MAPG_04524 Magnaporthe poae MAPG_04524 I 0.000
MBR_02972 Metarhizium brunneum MBR_02972 I 0.000
MCYG_00678 Arthroderma otae MCYG_00678 N 0.000
MCYG_00678 Microsporum canis MCYG_00678 N 0.000
MGU_00040 Metarhizium guizhouense MGU_00040 I 0.000
MGYG_01294 Microsporum gypseum MGYG_01294 N 0.000
NechaG38204 Fusarium solani NechaG38204 I 0.000
NFIA_066040 Neosartorya fischeri CADNFIAG00006379 I 0.000
OCS_03275 Ophiocordyceps sinensis OCS_03275 I 0.000
PAAG_06537 Paracoccidioides sp lutzii PAAG_06537 N 0.000
PABG_02567 Paracoccidioides brasiliensis PABG_02567 N 0.000
PFICI_12570 Pestalotiopsis fici PFICI_12570 I 0.000
PMAA_023500 Talaromyces marneffei PMAA_023500 N 0.000
PMAA_023500 Penicillium marneffei PMAA_023500 N 0.000
PV04_04915 Capronia semiimmersa PV04_04915 I 0.000
PV05_09372 Exophiala xenobiotica PV05_09372 I 0.000
PV06_04279 Exophiala oligosperma PV06_04279 I 0.000
PV07_07651 Cladophialophora immunda PV07_07651 I 0.000
PV08_10349 Exophiala spinifera PV08_10349 I 0.000
PV10_00143 Exophiala mesophila PV10_00143 I 0.000
PV11_04194 Exophiala sideris PV11_04194 I 0.000
PVAR5_7714 Byssochlamys spectabilis PVAR5_7714 I 0.000
S40285_02311 Stachybotrys chlorohalonata S40285_02311 I 0.000
S40288_02152 Stachybotrys chartarum S40288_02152 I 0.000
SAPIO_CDS4389 Scedosporium apiospermum SAPIO_CDS4389 I 0.000
SPBR_02307 Sporothrix brasiliensis SPBR_02307 I 0.000
TEQG_05544 Trichophyton equinum TEQG_05544 N 0.000
TESG_05703 Trichophyton tonsurans TESG_05703 N 0.000
TRIATDRAFT_150201 Trichoderma atroviride TRIATDRAFT_150201 I 0.000
TRIREDRAFT_121584 Trichoderma reesei TRIREDRAFT_121584 I 0.000
TRIVIDRAFT_82456 Trichoderma virens TRIVIDRAFT_82456 I 0.000
TRV_03376 Trichophyton verrucosum TRV_03376 N 0.000
TSTA_031880 Talaromyces stipitatus TSTA_031880 N 0.000
UCREL1_8337 Eutypa lata UCREL1_8337 I 0.000
UCRPA7_7147 Togninia minima UCRPA7_7147 I 0.000
UV8b_4535 Ustilaginoidea virens UV8b_4535 I 0.000
VDAG_04003 Verticillium dahliae VDAG_04003 I 0.000
VDBG_03095 Verticillium alfalfae VDBG_03095 I 0.000
VDBG_03095 Verticillium albo atrum VDBG_03095 I 0.000
VHEMI07645 Torrubiella hemipterigena VHEMI07645 I 0.000
X797_001037 Metarhizium robertsii X797_001037 I 0.000
Z517_12080 Fonsecaea pedrosoi Z517_12080 I 0.000
Z518_09813 Rhinocladiella mackenziei Z518_09813 I 0.000
Z519_10261 Cladophialophora bantiana Z519_10261 I 0.000