Carubv10017988m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10017988m.g T142731_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G49930
M06814_2.00
Arabidopsis thaliana
DGATTTC

GAAATCH
Dap-seq
OMalley et al.(2016)
AT3G49930_col_a
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017988m C2H2 ZF 89 111

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh2_kg.5__1344__AT3G49930.1 Arabidopsis lyrata fgenesh2_kg.5__1344__AT3G49930.1 I 0.827
AT3G49930 Arabidopsis thaliana AT3G49930 D 0.827
Bostr.6864s0249 Boechera stricta Bostr.6864s0249 I 0.827
Bo7g099140 Brassica oleracea Bo7g099140 I 0.827
Cagra.4491s0013 Capsella grandiflora Cagra.4491s0013 I 0.827
LjSGA_004510.1 Lotus japonicus LjSGA_004510.1 I 0.785
BGIOSGA028423 Oryza indica BGIOSGA028423 I 0.825
ORUFI08G11110 Oryza rufipogon ORUFI08G11110 I 0.825