Ciclev10002297m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10002297m.g T142758_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.822 0.891
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.803 0.935
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.799 0.717
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.799 0.696
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.796 0.870
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.796 0.870
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.796 0.870
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.787 0.804
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.787 0.804
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10002297m C2H2 ZF 98 120
Ciclev10002297m C2H2 ZF 155 177

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_007214 Theobroma cacao TCM_007214 I 0.827
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.827
Bra038219 Brassica rapa Bra038219 I 0.827
TCM_034720 Theobroma cacao TCM_034720 I 0.827
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.827
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.827
Bra022436 Brassica rapa Bra022436 I 0.827
MDP0000573176 Malus domestica MDP0000573176 I 0.827
MDP0000319225 Malus domestica MDP0000319225 I 0.827
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.827
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.827
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.827
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.827
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.827
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.827
Pm021284 Prunus mume Pm021284 I 0.827
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.827
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.827
Pm005390 Prunus mume Pm005390 I 0.827
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.827
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.827
Ca_01586 Cicer arietinum Ca_01586 I 0.827
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.827
Ca_18364 Cicer arietinum Ca_18364 I 0.827
MDP0000762756 Malus domestica MDP0000762756 I 0.827
MDP0000198015 Malus domestica MDP0000198015 I 0.827
PK10188.1 Cannabis sativa PK10188.1 I 0.827
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.827
Bo5g113850 Brassica oleracea Bo5g113850 I 0.827
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.827
Bo1g113530 Brassica oleracea Bo1g113530 I 0.827
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.827
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.827
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.827
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.827
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.827
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.827
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.827
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.827
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.827
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.826
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.826
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.825
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.822
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.822
AZF2 Arabidopsis thaliana AT3G19580 D 0.822
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.822
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.821
30170.m013751 Ricinus communis 30170.m013751 I 0.820
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.818
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.818
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.818
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.818
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.812
28152.m000908 Ricinus communis 28152.m000908 I 0.812
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.812
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.812
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.811
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.811
mgf006006m Mimulus guttatus mgf006006m I 0.811
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.803
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.803
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.803
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.803
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.803
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.803
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.803
ZAT6 Arabidopsis thaliana AT5G04340 D 0.803
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.803
Bo9g181170 Brassica oleracea Bo9g181170 I 0.803
Bra009464 Brassica rapa Bra009464 I 0.803
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.803
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.802
Bo7g048650 Brassica oleracea Bo7g048650 I 0.802
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.799
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.799
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.799
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.799
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.799
ZAT9 Arabidopsis thaliana AT3G60580 D 0.799
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.799
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.799
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.799
ZAT4 Arabidopsis thaliana AT2G45120 D 0.799
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.799
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.798
Bra033666 Brassica rapa Bra033666 I 0.798
Bo7g065200 Brassica oleracea Bo7g065200 I 0.798
Ca_05641 Cicer arietinum Ca_05641 I 0.798
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.798
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.798
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.798
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.797
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.797
Bo3g142840 Brassica oleracea Bo3g142840 I 0.796
Bra010922 Brassica rapa Bra010922 I 0.796
ZAT10 Arabidopsis thaliana AT1G27730 D 0.796
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.796
TCM_000780 Theobroma cacao TCM_000780 I 0.796
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.796
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.794
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.793
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.793
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.793
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.793
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.793
Ca_23672 Cicer arietinum Ca_23672 I 0.793
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.793
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.793
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.793
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.793
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.793
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.793
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.793
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.793
AZF3 Arabidopsis thaliana AT5G43170 I 0.792
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.792
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.792
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.792
Bo1g081350 Brassica oleracea Bo1g081350 I 0.792
Si023013m.g Setaria italica Si023013m.g I 0.792
Bra012914 Brassica rapa Bra012914 I 0.792
Bra029985 Brassica rapa Bra029985 I 0.792
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.792
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.792
OS12G0583700 Oryza sativa OS12G0583700 I 0.792
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.790
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.788
Bra018817 Brassica rapa Bra018817 I 0.788
Bo9g019120 Brassica oleracea Bo9g019120 I 0.787
Bra031834 Brassica rapa Bra031834 I 0.787
Bo2g168030 Brassica oleracea Bo2g168030 I 0.787
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.787
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.787
AZF1 Arabidopsis thaliana AT5G67450 D 0.787
Bra037845 Brassica rapa Bra037845 I 0.787
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.787
29661.m000908 Ricinus communis 29661.m000908 I 0.785
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.784
OB03G42170 Oryza brachyantha OB03G42170 I 0.784
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.783
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.783
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.782
Bra032845 Brassica rapa Bra032845 I 0.778
Bo5g052290 Brassica oleracea Bo5g052290 I 0.778
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.776
ZAT1 Arabidopsis thaliana AT1G02030 D 0.776
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.776
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.776
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.776
Bra014483 Brassica rapa Bra014483 I 0.775
Bo8g095300 Brassica oleracea Bo8g095300 I 0.775
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.775
Bo6g077190 Brassica oleracea Bo6g077190 I 0.775
Bo4g104940 Brassica oleracea Bo4g104940 I 0.775
Bra040325 Brassica rapa Bra040325 I 0.775
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.775
Bra000372 Brassica rapa Bra000372 I 0.775
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.775
Bra007545 Brassica rapa Bra007545 I 0.775
Bo4g195370 Brassica oleracea Bo4g195370 I 0.775
Bo3g037560 Brassica oleracea Bo3g037560 I 0.775
Bra003422 Brassica rapa Bra003422 I 0.775
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.773
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.773
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.773
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.770
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.769
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.769
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.769
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.769
OBART04G21020 Oryza barthii OBART04G21020 I 0.769
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.769
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.769
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.769
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.769
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.769
OS04G0552700 Oryza sativa OS04G0552700 I 0.769
Si010615m.g Setaria italica Si010615m.g I 0.769
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.769
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.769
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.769
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.769
OB04G28040 Oryza brachyantha OB04G28040 I 0.769
mgf017082m Mimulus guttatus mgf017082m I 0.769
30174.m008818 Ricinus communis 30174.m008818 I 0.769
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.769
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.769
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.768
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.768
mgf021094m Mimulus guttatus mgf021094m I 0.768
mgf021789m Mimulus guttatus mgf021789m I 0.765
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.765
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.765
fgenesh1_pm.C_scaffold_1003183 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003183 I 0.764
Cla001400 Citrullus lanatus Cla001400 I 0.764
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.764
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.762
Cla022966 Citrullus lanatus Cla022966 I 0.761
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.761
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.760
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.760
30147.m014242 Ricinus communis 30147.m014242 I 0.760
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.760
OS02G0659500 Oryza sativa OS02G0659500 I 0.759
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.759
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.759
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.759
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.759
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.759
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.759
OBART02G26700 Oryza barthii OBART02G26700 I 0.759
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.759
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.759
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.759
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.759
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.759
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.758
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.758
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.758
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.758
Si037343m.g Setaria italica Si037343m.g N 0.758
OS03G0437200 Oryza sativa OS03G0437200 I 0.758
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.758
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.758
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.758
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.758
OB03G31780 Oryza brachyantha OB03G31780 I 0.758
OBART03G22570 Oryza barthii OBART03G22570 I 0.758
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.755