Ciclev10004533m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10004533m.g T142763_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
IDD4
M06809_2.00
Arabidopsis thaliana
WWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWW
Dap-seq
OMalley et al.(2016)
IDD4_col_a
0.827 0.953
IDD7
M06803_2.00
Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHHN
Dap-seq
OMalley et al.(2016)
IDD7_col_a
0.827 0.953
MGP
M06795_2.00
Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAWHDND
Dap-seq
OMalley et al.(2016)
MGP_col_a
0.827 0.953
MGP
M06796_2.00
Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAHNN
Dap-seq
OMalley et al.(2016)
MGP_colamp_a
0.827 0.953
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD

HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.822 0.977
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.822 0.977
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD

HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.822 0.930
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD

HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.822 0.930
NUC
M06822_2.00
Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD

HRVWARAMGACAAAANNNNN
Dap-seq
OMalley et al.(2016)
NUC_col_a
0.803 0.930
NUC
M06823_2.00
Arabidopsis thaliana
NDTTTTGTCGTYTWNYD

HRNWARACGACAAAAHN
Dap-seq
OMalley et al.(2016)
NUC_colamp_a
0.803 0.930
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.797 0.930
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD

HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.794 0.930
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD

HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.794 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10004533m C2H2 ZF 148 169
Ciclev10004533m C2H2 ZF 168 194

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

645 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCNE_0000650001 Toxocara canis TCNE_0000650001 N 0.000
csin110359 Clonorchis sinensis csin110359 N 0.000
BTMF_0001098901 Brugia timori BTMF_0001098901 N 0.000
ASU_14779 Ascaris suum ASU_14779 N 0.000
ALUE_0000473701 Ascaris lumbricoides ALUE_0000473701 N 0.000
XP_002932070 Xenopus tropicalis XP_002932070 N 0.000
Sjc_0077640 Schistosoma japonicum Sjc_0077640 N 0.000
Sakowv30007281m.g Saccoglossus kowalevskii Sakowv30007281m.g N 0.000
Ocbimv22015923m.g Octopus bimaculoides Ocbimv22015923m.g N 0.000
fgenesh2_pg.scaffold_120000067 Branchiostoma floridae fgenesh2_pg.scaffold_120000067 N 0.000
fgenesh2_pg.scaffold_120000043 Branchiostoma floridae fgenesh2_pg.scaffold_120000043 N 0.000
Hsal_12996--XP_001120922.1_APIME Harpegnathos saltator Hsal_12996--XP_001120922.1_APIME N 0.000
Cflo_08746--XP_001120922.1_APIME Camponotus floridanus Cflo_08746--XP_001120922.1_APIME N 0.000
D915_09507 Fasciola hepatica D915_09507 N 0.000
ECPE_0000630101 Echinostoma caproni ECPE_0000630101 N 0.000
TCLT_0000871401 Thelazia callipaeda TCLT_0000871401 N 0.000
SPAL_0001306600 Strongyloides papillosus SPAL_0001306600 N 0.000
nRc.2.0.1.g07373 Romanomermis culicivorax nRc.2.0.1.g07373 N 0.000
nOo.2.0.1.g02891 Onchocerca ochengi nOo.2.0.1.g02891 N 0.000
nDi.2.2.2.g05204 Dirofilaria immitis nDi.2.2.2.g05204 N 0.000
nAv.1.0.1.g07509 Acanthocheilonema viteae nAv.1.0.1.g07509 N 0.000
L898_g21023 Steinernema monticolum L898_g21023 N 0.000
L893_g15812 Steinernema glaseri L893_g15812 N 0.000
L889_g13531 Steinernema feltiae L889_g13531 N 0.000
L596_g22127 Steinernema carpocapsae L596_g22127 N 0.000
Hba_15127 Heterorhabditis bacteriophora Hba_15127 N 0.000
EEL_0000836801 Elaeophora elaphi EEL_0000836801 N 0.000
YQE_06148 Dendroctonus ponderosae YQE_06148 N 0.000
WBGene00242152 Onchocerca volvulus WBGene00242152 N 0.000
hlh-13 Caenorhabditis elegans WBGene00001957 N 0.000
si:dkey-34f9.3 Danio rerio ENSDARG00000077813 N 0.000
ENSAMXG00000018323 Astyanax mexicanus ENSAMXG00000018323 N 0.000
DAPPUDRAFT_39727 Daphnia pulex DAPPUDRAFT_39727 N 0.000
CRE00836 Caenorhabditis remanei CRE00836 N 0.000
CJA18896 Caenorhabditis japonica CJA18896 N 0.000
CGI_10004257 Crassostrea gigas CGI_10004257 N 0.000
CBN25524 Caenorhabditis brenneri CBN25524 N 0.000
CBG14376 Caenorhabditis briggsae CBG14376 N 0.000
CapteG94620 Capitella teleta CapteG94620 N 0.000
CapteG155726 Capitella teleta CapteG155726 N 0.000
Bm4202 Brugia malayi Bm4202 N 0.000
BGIBMGA000497 Bombyx mori BGIBMGA000497 N 0.000
ENSLACG00000012364 Latimeria chalumnae ENSLACG00000012364 N 0.000
ENSLOCG00000009094 Lepisosteus oculatus ENSLOCG00000009094 N 0.000
TC013785 Tribolium castaneum TC013785 N 0.000
PHUM498340 Pediculus humanus PHUM498340 N 0.000
NV10328 Nasonia vitripennis NV10328 N 0.000
MCINX010914 Melitaea cinxia MCINX010914 N 0.000
LotgiG79113 Lottia gigantea LotgiG79113 N 0.000
LOAG_03370 Loa loa LOAG_03370 N 0.000
KGM_10891 Danaus plexippus KGM_10891 N 0.000
GB40407 Apis mellifera GB40407 N 0.000
ENSPMAG00000000069 Petromyzon marinus ENSPMAG00000000069 N 0.000
ENSPFOG00000002143 Poecilia formosa ENSPFOG00000002143 N 0.000
ENSOANG00000012949 Ornithorhynchus anatinus ENSOANG00000012949 N 0.000
ENSMODG00000023118 Monodelphis domestica ENSMODG00000023118 N 0.000
WUBG_02321 Wuchereria bancrofti WUBG_02321 N 0.000