Eucgr.A01230 (Eucalyptus grandis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Eucgr.A01230 T142815_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.789 0.761
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.789 0.761
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.784 0.739
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.780 0.761
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.780 0.761
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.768 0.652
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.766 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A01230.1 C2H2 ZF 42 64
Eucgr.A01230.1 C2H2 ZF 91 113

Links

Other C2H2 ZF family TFs
Other Eucalyptus grandis TFs

337 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
EMIHUDRAFT_452808 Emiliania huxleyi EMIHUDRAFT_452808 N 0.000
EMIHUDRAFT_49282 Emiliania huxleyi EMIHUDRAFT_49282 N 0.000
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.000
GL11071 Drosophila persimilis FBgn0148681 N 0.000
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.000
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.000
mgf014518m Mimulus guttatus mgf014518m I 0.000
NCLIV_024230 Neospora caninum NCLIV_024230 N 0.000
OB09G25530 Oryza brachyantha OB09G25530 I 0.000
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.000
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.000
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.000
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.000
OS09G0551600 Oryza sativa OS09G0551600 I 0.000
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.000
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.000
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.000
Si031512m.g Setaria italica Si031512m.g I 0.000
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.000