Eucgr.B02487 (Eucalyptus grandis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Eucgr.B02487 T142834_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.762 0.884
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.762 0.884
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.758 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B02487.1 C2H2 ZF 129 150
Eucgr.B02487.1 C2H2 ZF 149 175

Links

Other C2H2 ZF family TFs
Other Eucalyptus grandis TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla014763 Citrullus lanatus Cla014763 I 0.791
29643.m000323 Ricinus communis 29643.m000323 I 0.791
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I 0.791
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I 0.791
Cla005124 Citrullus lanatus Cla005124 I 0.791
Ca_14587 Cicer arietinum Ca_14587 I 0.791
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I 0.791
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I 0.791
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I 0.791
Cucsa.201280 Cucumis sativus Cucsa.201280 I 0.791
Cucsa.222420 Cucumis sativus Cucsa.222420 I 0.791
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I 0.791
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I 0.791
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I 0.791
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I 0.791
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I 0.791
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I 0.791
Cagra.28200s0002 Capsella grandiflora Cagra.28200s0002 I 0.791
Carubv10017213m.g Capsella rubella Carubv10017213m.g I 0.791
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I 0.791
MTR_4g059870 Medicago truncatula MTR_4g059870 I 0.791
TCM_041053 Theobroma cacao TCM_041053 I 0.791
Lus10036116.g Linum usitatissimum Lus10036116.g I 0.786
Thhalv10016023m.g Eutrema salsugineum Thhalv10016023m.g I 0.786
IDD9 Arabidopsis thaliana AT3G45260 D 0.786
GLYMA12G07510 Glycine max GLYMA12G07510 I 0.786
Lus10007409.g Linum usitatissimum Lus10007409.g I 0.786
Bra033840 Brassica rapa Bra033840 I 0.786
mgf001929m Mimulus guttatus mgf001929m I 0.786
scaffold_501386.1 Arabidopsis lyrata scaffold_501386.1 I 0.786
Bo3g129830 Brassica oleracea Bo3g129830 I 0.786
Bo1g065210 Brassica oleracea Bo1g065210 I 0.786
Bo2g167740 Brassica oleracea Bo2g167740 I 0.786
Bostr.18473s0395 Boechera stricta Bostr.18473s0395 I 0.786
Thhalv10002526m.g Eutrema salsugineum Thhalv10002526m.g I 0.786
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I 0.774
GLYMA12G29370 Glycine max GLYMA12G29370 I 0.772
Sb04g021440 Sorghum bicolor Sb04g021440 I 0.768
ONIVA02G20290 Oryza nivara ONIVA02G20290 I 0.768
OPUNC02G16560 Oryza punctata OPUNC02G16560 I 0.768
LPERR02G14730 Leersia perrieri LPERR02G14730 I 0.768
F775_04344 Aegilops tauschii F775_04344 I 0.768
BGIOSGA006371 Oryza indica BGIOSGA006371 I 0.768
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I 0.768
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I 0.768
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I 0.768
OMERI02G18510 Oryza meridionalis OMERI02G18510 I 0.768
OLONG_013811 Oryza longistaminata OLONG_013811 I 0.768
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I 0.768
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I 0.768
GSMUA_Achr2G16690_001 Musa acuminata GSMUA_Achr2G16690_001 I 0.768
OBART02G18320 Oryza barthii OBART02G18320 I 0.768
OB02G26130 Oryza brachyantha OB02G26130 I 0.768
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I 0.768
OS02G0518500 Oryza sativa OS02G0518500 I 0.768
TRIUR3_32694 Triticum urartu TRIUR3_32694 I 0.768
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I 0.768
Si019690m.g Setaria italica Si019690m.g I 0.768
GRMZM2G320287 Zea mays GRMZM2G320287 I 0.768
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I 0.768
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I 0.767
PK25985.1 Cannabis sativa PK25985.1 I 0.767
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I 0.767
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I 0.767
MTR_2g093960 Medicago truncatula MTR_2g093960 I 0.767
LjSGA_017927.1 Lotus japonicus LjSGA_017927.1 I 0.767
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I 0.767
Carubv10001008m.g Capsella rubella Carubv10001008m.g I 0.767
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I 0.767
GSMUA_AchrUn_randomG09270_001 Musa acuminata GSMUA_AchrUn_randomG09270_001 I 0.763
BRADI3G51090 Brachypodium distachyon BRADI3G51090 I 0.762
PRUPE_ppa004359mg Prunus persica PRUPE_ppa004359mg I 0.762
POPTR_0006s24410 Populus trichocarpa POPTR_0006s24410 I 0.762
IDD1 Arabidopsis thaliana AT5G66730 D 0.762
Gorai.010G099600 Gossypium raimondii Gorai.010G099600 I 0.762
Pm005517 Prunus mume Pm005517 I 0.762
29794.m003304 Ricinus communis 29794.m003304 I 0.762
30128.m008580 Ricinus communis 30128.m008580 I 0.762
SapurV1A.0086s0480 Salix purpurea SapurV1A.0086s0480 I 0.762
Bostr.0568s0090 Boechera stricta Bostr.0568s0090 I 0.762
GLYMA11G15950 Glycine max GLYMA11G15950 I 0.762
Bra038293 Brassica rapa Bra038293 I 0.762
PK15161.1 Cannabis sativa PK15161.1 I 0.762
gene02702-v1.0-hybrid Fragaria vesca gene02702-v1.0-hybrid I 0.762
GLYMA03G39650 Glycine max GLYMA03G39650 I 0.762
Cagra.2007s0026 Capsella grandiflora Cagra.2007s0026 I 0.762
Eucgr.B02626 Eucalyptus grandis Eucgr.B02626 I 0.762
fgenesh2_kg.8__2743__AT5G66730.1 Arabidopsis lyrata fgenesh2_kg.8__2743__AT5G66730.1 I 0.762
PGSC0003DMG400008205 Solanum tuberosum PGSC0003DMG400008205 I 0.762
Solyc08g063040.2 Solanum lycopersicum Solyc08g063040.2 I 0.762
Bra037151 Brassica rapa Bra037151 I 0.762
MLOC_60958 Hordeum vulgare MLOC_60958 I 0.762
MTR_1g016010 Medicago truncatula MTR_1g016010 I 0.762
Eucgr.J02851 Eucalyptus grandis Eucgr.J02851 I 0.762
Carubv10026275m.g Capsella rubella Carubv10026275m.g I 0.762
LPERR04G17920 Leersia perrieri LPERR04G17920 I 0.762
Thhalv10004063m.g Eutrema salsugineum Thhalv10004063m.g I 0.762
GSMUA_Achr7G13540_001 Musa acuminata GSMUA_Achr7G13540_001 I 0.762
VIT_04s0008g01160 Vitis vinifera VIT_04s0008g01160 I 0.762
TCM_037300 Theobroma cacao TCM_037300 I 0.762
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.761
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.761
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I 0.758
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I 0.758
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I 0.758
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I 0.758
cassava20187.m1 Manihot esculenta cassava20187.m1 I 0.758
Bo2g100660 Brassica oleracea Bo2g100660 I 0.758
mgf003691m Mimulus guttatus mgf003691m I 0.758
Bo9g183170 Brassica oleracea Bo9g183170 I 0.758
cassava26767.m1 Manihot esculenta cassava26767.m1 I 0.758
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I 0.758
Carubv10000736m.g Capsella rubella Carubv10000736m.g I 0.758
mgf023281m Mimulus guttatus mgf023281m I 0.758
Bo2g003880 Brassica oleracea Bo2g003880 I 0.758
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I 0.758
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I 0.758
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I 0.758
cassava20362.m1 Manihot esculenta cassava20362.m1 I 0.758
30078.m002347 Ricinus communis 30078.m002347 I 0.758
Bra009549 Brassica rapa Bra009549 I 0.758
Bra018535 Brassica rapa Bra018535 I 0.758
Ca_17124 Cicer arietinum Ca_17124 I 0.758
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I 0.758
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I 0.758
Cla018558 Citrullus lanatus Cla018558 I 0.758
29883.m001956 Ricinus communis 29883.m001956 I 0.758
Bra005741 Brassica rapa Bra005741 I 0.758
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I 0.758
Pm001002 Prunus mume Pm001002 I 0.758
JKD Vitis vinifera VIT_08s0040g02100 I 0.758
PGSC0003DMG400029483 Solanum tuberosum PGSC0003DMG400029483 I 0.758
TCM_022127 Theobroma cacao TCM_022127 I 0.758
MDP0000243664 Malus domestica MDP0000243664 I 0.758
MDP0000480293 Malus domestica MDP0000480293 I 0.758
MDP0000688613 Malus domestica MDP0000688613 I 0.758
MDP0000122321 Malus domestica MDP0000122321 I 0.758
Lus10026497.g Linum usitatissimum Lus10026497.g I 0.758
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I 0.758
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I 0.758
Lus10019927.g Linum usitatissimum Lus10019927.g I 0.758
MDP0000826293 Malus domestica MDP0000826293 I 0.758
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I 0.758
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I 0.758
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I 0.758
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I 0.758
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I 0.758
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I 0.758
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I 0.758
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I 0.758
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I 0.758
GLYMA19G36430 Glycine max GLYMA19G36430 I 0.758
PK18288.1 Cannabis sativa PK18288.1 I 0.758
GLYMA13G20231 Glycine max GLYMA13G20231 I 0.758
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I 0.758
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I 0.758
GLYMA03G31390 Glycine max GLYMA03G31390 I 0.758
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I 0.758
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I 0.758
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I 0.758
TCM_004271 Theobroma cacao TCM_004271 I 0.758
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I 0.758
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I 0.758
GLYMA10G03541 Glycine max GLYMA10G03541 I 0.758
GLYMA10G05880 Glycine max GLYMA10G05880 I 0.758
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I 0.758
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I 0.758
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I 0.758
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I 0.758
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I 0.758
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I 0.758
JKD Arabidopsis thaliana AT5G03150 D 0.758
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I 0.758
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I 0.758
PK02322.1 Cannabis sativa PK02322.1 I 0.757
Thhalv10010353m.g Eutrema salsugineum Thhalv10010353m.g I 0.757
SapurV1A.3093s0010 Salix purpurea SapurV1A.3093s0010 I 0.757
MDP0000137126 Malus domestica MDP0000137126 I 0.757
Eucgr.I02463 Eucalyptus grandis Eucgr.I02463 I 0.757
Gorai.003G016300 Gossypium raimondii Gorai.003G016300 I 0.757
Gorai.003G016200 Gossypium raimondii Gorai.003G016200 I 0.757
gene29562-v1.0-hybrid Fragaria vesca gene29562-v1.0-hybrid I 0.757
evm.TU.supercontig_158.1 Carica papaya evm.TU.supercontig_158.1 I 0.757
BGIOSGA008789 Oryza indica BGIOSGA008789 I 0.757
Gorai.007G205300 Gossypium raimondii Gorai.007G205300 I 0.757
BGIOSGA016934 Oryza indica BGIOSGA016934 I 0.757
SapurV1A.0255s0120 Salix purpurea SapurV1A.0255s0120 I 0.757
Carubv10017209m.g Capsella rubella Carubv10017209m.g I 0.757
Pavir.Gb01057 Panicum virgatum Pavir.Gb01057 I 0.757
Pavir.Ga01013 Panicum virgatum Pavir.Ga01013 I 0.757
Lus10041723.g Linum usitatissimum Lus10041723.g I 0.757
SapurV1A.0817s0050 Salix purpurea SapurV1A.0817s0050 I 0.757
TRIUR3_35215 Triticum urartu TRIUR3_35215 I 0.757
OBART04G21910 Oryza barthii OBART04G21910 I 0.757
OGLUM01G23770 Oryza glumaepatula OGLUM01G23770 I 0.757
OGLUM02G28000 Oryza glumaepatula OGLUM02G28000 I 0.757
OBART01G20150 Oryza barthii OBART01G20150 I 0.757
OB02G34800 Oryza brachyantha OB02G34800 I 0.757
LPERR02G22320 Leersia perrieri LPERR02G22320 I 0.757
MLOC_56120 Hordeum vulgare MLOC_56120 I 0.757
MLOC_57518 Hordeum vulgare MLOC_57518 I 0.757
OGLUM04G21940 Oryza glumaepatula OGLUM04G21940 I 0.757
OMERI01G18610 Oryza meridionalis OMERI01G18610 I 0.757
OPUNC01G20510 Oryza punctata OPUNC01G20510 I 0.757
OPUNC02G25110 Oryza punctata OPUNC02G25110 I 0.757
OPUNC03G06880 Oryza punctata OPUNC03G06880 I 0.757
ONIVA04G20460 Oryza nivara ONIVA04G20460 I 0.757
ONIVA02G30280 Oryza nivara ONIVA02G30280 I 0.757
OMERI02G26740 Oryza meridionalis OMERI02G26740 I 0.757
ONIVA01G22710 Oryza nivara ONIVA01G22710 I 0.757
LPERR01G17290 Leersia perrieri LPERR01G17290 I 0.757
GSMUA_Achr5G06450_001 Musa acuminata GSMUA_Achr5G06450_001 I 0.757
GLYMA17G34601 Glycine max GLYMA17G34601 I 0.757
GLYMA19G34220 Glycine max GLYMA19G34220 I 0.757
GLYMA20G37900 Glycine max GLYMA20G37900 I 0.757
GLYMA10G29390 Glycine max GLYMA10G29390 I 0.757
GLYMA01G38290 Glycine max GLYMA01G38290 I 0.757
BRADI5G18530 Brachypodium distachyon BRADI5G18530 I 0.757
F775_28900 Aegilops tauschii F775_28900 I 0.757
AtIDD2 Arabidopsis lyrata fgenesh2_kg.5__1410__AT3G50700.1 I 0.757
GRMZM2G027333 Zea mays GRMZM2G027333 I 0.757
GRMZM2G129261 Zea mays GRMZM2G129261 I 0.757
GSMUA_Achr1G02080_001 Musa acuminata GSMUA_Achr1G02080_001 I 0.757
GSMUA_Achr1G07110_001 Musa acuminata GSMUA_Achr1G07110_001 I 0.757
GSMUA_Achr4G04310_001 Musa acuminata GSMUA_Achr4G04310_001 I 0.757
GSMUA_Achr10G21260_001 Musa acuminata GSMUA_Achr10G21260_001 I 0.757
GSMUA_Achr10G07180_001 Musa acuminata GSMUA_Achr10G07180_001 I 0.757
GRMZM2G177693 Zea mays GRMZM2G177693 I 0.757
GRMZM5G884137 Zea mays GRMZM5G884137 I 0.757
OPUNC04G19640 Oryza punctata OPUNC04G19640 I 0.757
ORGLA02G0236400 Oryza glaberrima ORGLA02G0236400 I 0.757
VIT_04s0023g01430 Vitis vinifera VIT_04s0023g01430 I 0.757
Ca_03678 Cicer arietinum Ca_03678 I 0.757
Cla014416 Citrullus lanatus Cla014416 I 0.757
Traes_6DL_244C908B5 Triticum aestivum Traes_6DL_244C908B5 I 0.757
TRAES3BF042100060CFD_g Triticum aestivum TRAES3BF042100060CFD_g I 0.757
Traes_2BL_58A855C7B Triticum aestivum Traes_2BL_58A855C7B I 0.757
Traes_2DL_540050272 Triticum aestivum Traes_2DL_540050272 I 0.757
Traes_3AL_35CA14632 Triticum aestivum Traes_3AL_35CA14632 I 0.757
Cla015825 Citrullus lanatus Cla015825 I 0.757
Pm026593 Prunus mume Pm026593 I 0.757
mgf003280m Mimulus guttatus mgf003280m I 0.757
mgf006239m Mimulus guttatus mgf006239m I 0.757
Bostr.6864s0177 Boechera stricta Bostr.6864s0177 I 0.757
Cucsa.190800 Cucumis sativus Cucsa.190800 I 0.757
Cucsa.163800 Cucumis sativus Cucsa.163800 I 0.757
cassava29681.valid.m1 Manihot esculenta cassava29681.valid.m1 I 0.757
cassava42858.valid.m1 Manihot esculenta cassava42858.valid.m1 I 0.757
Traes_2AL_7ABA7B7C8 Triticum aestivum Traes_2AL_7ABA7B7C8 I 0.757
TCM_000429 Theobroma cacao TCM_000429 I 0.757
OS02G0672100 Oryza sativa OS02G0672100 I 0.757
OS04G0566400 Oryza sativa OS04G0566400 I 0.757
BRADI2G41550 Brachypodium distachyon BRADI2G41550 I 0.757
OS01G0572300 Oryza sativa OS01G0572300 I 0.757
ORUFI04G23520 Oryza rufipogon ORUFI04G23520 I 0.757
ORUFI01G22710 Oryza rufipogon ORUFI01G22710 I 0.757
ORUFI02G28900 Oryza rufipogon ORUFI02G28900 I 0.757
PGSC0003DMG400012684 Solanum tuberosum PGSC0003DMG400012684 I 0.757
POPTR_0005s12710 Populus trichocarpa POPTR_0005s12710 I 0.757
Si001287m.g Setaria italica Si001287m.g I 0.757
Si001504m.g Setaria italica Si001504m.g I 0.757
Si009633m.g Setaria italica Si009633m.g I 0.757
Sb06g025550 Sorghum bicolor Sb06g025550 I 0.757
Sb03g025790 Sorghum bicolor Sb03g025790 I 0.757
XM_002310763.1 Populus trichocarpa POPTR_0007s12520 I 0.757
PRUPE_ppa004299mg Prunus persica PRUPE_ppa004299mg I 0.757
Cagra.0926s0031 Capsella grandiflora Cagra.0926s0031 I 0.757