CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.B03566
(
Eucalyptus grandis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Eucgr.B03566
T142837_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.763
0.829
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG
CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.756
0.732
id1
M10380_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.756
0.732
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.B03566.1
C2H2 ZF
82
103
WKCDKCSKRYAVQSDWKAHTKI
Eucgr.B03566.1
C2H2 ZF
104
128
CGTREYRCECGTIFSRKDSFVTHRA
Links
Other
C2H2 ZF
family TFs
Other
Eucalyptus grandis
TFs
172 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VIT_09s0054g01820
Vitis vinifera
VIT_09s0054g01820
I
0.821
POPTR_0001s12770
Populus trichocarpa
POPTR_0001s12770
I
0.821
cassava21529.m1
Manihot esculenta
cassava21529.m1
I
0.821
POPTR_0327s00220
Populus trichocarpa
POPTR_0327s00220
I
0.821
Gorai.005G198100
Gossypium raimondii
Gorai.005G198100
I
0.821
TCM_008261
Theobroma cacao
TCM_008261
I
0.821
GLYMA11G15950
Glycine max
GLYMA11G15950
I
0.801
30128.m008580
Ricinus communis
30128.m008580
I
0.801
PK25985.1
Cannabis sativa
PK25985.1
I
0.796
AtIDD12
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_6003159
I
0.796
Cagra.0635s0013
Capsella grandiflora
Cagra.0635s0013
I
0.796
PGSC0003DMG400003372
Solanum tuberosum
PGSC0003DMG400003372
I
0.796
Carubv10001008m.g
Capsella rubella
Carubv10001008m.g
I
0.796
Bostr.2983s0191
Boechera stricta
Bostr.2983s0191
I
0.796
Solyc06g075250.2
Solanum lycopersicum
Solyc06g075250.2
I
0.796
ONIVA02G20290
Oryza nivara
ONIVA02G20290
I
0.795
OMERI02G18510
Oryza meridionalis
OMERI02G18510
I
0.795
OLONG_013811
Oryza longistaminata
OLONG_013811
I
0.795
OGLUM02G18620
Oryza glumaepatula
OGLUM02G18620
I
0.795
OBART02G18320
Oryza barthii
OBART02G18320
I
0.795
OS02G0518500
Oryza sativa
OS02G0518500
I
0.795
Si019690m.g
Setaria italica
Si019690m.g
I
0.795
Traes_4DL_DF1F43E16
Triticum aestivum
Traes_4DL_DF1F43E16
I
0.795
Traes_4AS_F7A905B43
Triticum aestivum
Traes_4AS_F7A905B43
I
0.795
TRIUR3_32694
Triticum urartu
TRIUR3_32694
I
0.795
OB02G26130
Oryza brachyantha
OB02G26130
I
0.795
ORGLA02G0157900
Oryza glaberrima
ORGLA02G0157900
I
0.795
ORUFI02G19290
Oryza rufipogon
ORUFI02G19290
I
0.795
Sb04g021440
Sorghum bicolor
Sb04g021440
I
0.795
OPUNC02G16560
Oryza punctata
OPUNC02G16560
I
0.795
LPERR02G14730
Leersia perrieri
LPERR02G14730
I
0.795
Pavir.Ab01787
Panicum virgatum
Pavir.Ab01787
I
0.795
GRMZM2G320287
Zea mays
GRMZM2G320287
I
0.795
Pavir.Aa01904
Panicum virgatum
Pavir.Aa01904
I
0.795
BRADI3G44520
Brachypodium distachyon
BRADI3G44520
I
0.795
BGIOSGA006371
Oryza indica
BGIOSGA006371
I
0.795
F775_04344
Aegilops tauschii
F775_04344
I
0.795
GLYMA12G29370
Glycine max
GLYMA12G29370
I
0.792
Traes_4BL_38E55D7B4
Triticum aestivum
Traes_4BL_38E55D7B4
I
0.790
PGSC0003DMG400019342
Solanum tuberosum
PGSC0003DMG400019342
I
0.788
Solyc09g065670.2
Solanum lycopersicum
Solyc09g065670.2
I
0.788
POPTR_0005s23660
Populus trichocarpa
POPTR_0005s23660
I
0.782
SapurV1A.0376s0110
Salix purpurea
SapurV1A.0376s0110
I
0.782
Eucgr.B01471
Eucalyptus grandis
Eucgr.B01471
I
0.782
SapurV1A.0444s0180
Salix purpurea
SapurV1A.0444s0180
I
0.782
Lus10007409.g
Linum usitatissimum
Lus10007409.g
I
0.777
Lus10036116.g
Linum usitatissimum
Lus10036116.g
I
0.777
MTR_2g093960
Medicago truncatula
MTR_2g093960
I
0.777
mgf001929m
Mimulus guttatus
mgf001929m
I
0.777
GLYMA12G07510
Glycine max
GLYMA12G07510
I
0.777
Bo2g167740
Brassica oleracea
Bo2g167740
I
0.777
TCM_041053
Theobroma cacao
TCM_041053
I
0.772
MDP0000233477
Malus domestica
MDP0000233477
I
0.772
orange1.1g011146m.g
Citrus sinensis
orange1.1g011146m.g
I
0.772
Solyc11g069240.1
Solanum lycopersicum
Solyc11g069240.1
I
0.772
Gorai.006G120000
Gossypium raimondii
Gorai.006G120000
I
0.772
Eucgr.J00939
Eucalyptus grandis
Eucgr.J00939
I
0.772
Ciclev10028294m.g
Citrus clementina
Ciclev10028294m.g
I
0.772
cassava6007.valid.m1
Manihot esculenta
cassava6007.valid.m1
I
0.772
cassava832.valid.m1
Manihot esculenta
cassava832.valid.m1
I
0.772
gene04812-v1.0-hybrid
Fragaria vesca
gene04812-v1.0-hybrid
I
0.772
Gorai.001G131000
Gossypium raimondii
Gorai.001G131000
I
0.772
Cla005124
Citrullus lanatus
Cla005124
I
0.772
29643.m000323
Ricinus communis
29643.m000323
I
0.772
Cucsa.222420
Cucumis sativus
Cucsa.222420
I
0.772
Gorai.004G076800
Gossypium raimondii
Gorai.004G076800
I
0.772
VIT_06s0004g03070
Vitis vinifera
VIT_06s0004g03070
I
0.772
Ca_14587
Cicer arietinum
Ca_14587
I
0.772
MTR_4g059870
Medicago truncatula
MTR_4g059870
I
0.772
Solyc02g062940.2
Solanum lycopersicum
Solyc02g062940.2
I
0.772
PGSC0003DMG400015498
Solanum tuberosum
PGSC0003DMG400015498
I
0.772
PGSC0003DMG400008110
Solanum tuberosum
PGSC0003DMG400008110
I
0.772
Bra038293
Brassica rapa
Bra038293
I
0.772
BRADI5G08537
Brachypodium distachyon
BRADI5G08537
I
0.771
Cucsa.084240
Cucumis sativus
Cucsa.084240
I
0.768
gene20264-v1.0-hybrid
Fragaria vesca
gene20264-v1.0-hybrid
I
0.768
Cla015029
Citrullus lanatus
Cla015029
I
0.768
Cla018101
Citrullus lanatus
Cla018101
I
0.768
Pm030100
Prunus mume
Pm030100
I
0.768
Pm020252
Prunus mume
Pm020252
I
0.768
MDP0000319344
Malus domestica
MDP0000319344
I
0.768
Ca_07799
Cicer arietinum
Ca_07799
I
0.768
PK06347.1
Cannabis sativa
PK06347.1
I
0.768
PRUPE_ppa005468mg
Prunus persica
PRUPE_ppa005468mg
I
0.768
PRUPE_ppa003849mg
Prunus persica
PRUPE_ppa003849mg
I
0.768
Cucsa.306990
Cucumis sativus
Cucsa.306990
I
0.768
Bo9g021710
Brassica oleracea
Bo9g021710
I
0.767
mgf017113m
Mimulus guttatus
mgf017113m
I
0.767
GSMUA_Achr11G07460_001
Musa acuminata
GSMUA_Achr11G07460_001
I
0.767
LjSGA_017927.1
Lotus japonicus
LjSGA_017927.1
I
0.767
orange1.1g008017m.g
Citrus sinensis
orange1.1g008017m.g
I
0.766
Ciclev10007837m.g
Citrus clementina
Ciclev10007837m.g
I
0.766
Bra009549
Brassica rapa
Bra009549
I
0.763
MDP0000122321
Malus domestica
MDP0000122321
I
0.763
Bra005741
Brassica rapa
Bra005741
I
0.763
Gorai.008G002200
Gossypium raimondii
Gorai.008G002200
I
0.763
gene09703-v1.0-hybrid
Fragaria vesca
gene09703-v1.0-hybrid
I
0.763
GLYMA10G03541
Glycine max
GLYMA10G03541
I
0.763
evm.TU.supercontig_52.117
Carica papaya
evm.TU.supercontig_52.117
I
0.763
GLYMA03G31390
Glycine max
GLYMA03G31390
I
0.763
JKD
Arabidopsis lyrata
fgenesh2_kg.6__219__AT5G03150.1
I
0.763
Gorai.009G418600
Gossypium raimondii
Gorai.009G418600
I
0.763
Gorai.007G139800
Gossypium raimondii
Gorai.007G139800
I
0.763
Gorai.006G167600
Gossypium raimondii
Gorai.006G167600
I
0.763
Bra018535
Brassica rapa
Bra018535
I
0.763
Bo9g183170
Brassica oleracea
Bo9g183170
I
0.763
Thhalv10013267m.g
Eutrema salsugineum
Thhalv10013267m.g
I
0.763
SapurV1A.5138s0010
Salix purpurea
SapurV1A.5138s0010
I
0.763
JKD
Arabidopsis thaliana
AT5G03150
D
0.763
Bo2g003880
Brassica oleracea
Bo2g003880
I
0.763
Thhalv10028701m.g
Eutrema salsugineum
Thhalv10028701m.g
I
0.763
PK18288.1
Cannabis sativa
PK18288.1
I
0.763
LjT03L03.50.nd
Lotus japonicus
LjT03L03.50.nd
I
0.763
chr1.CM0322.120.nc
Lotus japonicus
chr1.CM0322.120.nc
I
0.763
AMTR_s00007p00061550
Amborella trichopoda
AMTR_s00007p00061550
I
0.763
SapurV1A.0209s0070
Salix purpurea
SapurV1A.0209s0070
I
0.763
SapurV1A.0112s0130
Salix purpurea
SapurV1A.0112s0130
I
0.763
MDP0000826293
Malus domestica
MDP0000826293
I
0.763
MDP0000688613
Malus domestica
MDP0000688613
I
0.763
MDP0000480293
Malus domestica
MDP0000480293
I
0.763
evm.TU.supercontig_45.59
Carica papaya
evm.TU.supercontig_45.59
I
0.763
orange1.1g011334m.g
Citrus sinensis
orange1.1g011334m.g
I
0.763
SapurV1A.0006s1510
Salix purpurea
SapurV1A.0006s1510
I
0.763
Bo2g100660
Brassica oleracea
Bo2g100660
I
0.763
orange1.1g011807m.g
Citrus sinensis
orange1.1g011807m.g
I
0.763
MDP0000243664
Malus domestica
MDP0000243664
I
0.763
GLYMA19G36430
Glycine max
GLYMA19G36430
I
0.763
Pm001002
Prunus mume
Pm001002
I
0.763
Cla018558
Citrullus lanatus
Cla018558
I
0.763
Ca_17124
Cicer arietinum
Ca_17124
I
0.763
PGSC0003DMG400010478
Solanum tuberosum
PGSC0003DMG400010478
I
0.763
29883.m001956
Ricinus communis
29883.m001956
I
0.763
cassava20362.m1
Manihot esculenta
cassava20362.m1
I
0.763
GLYMA10G05880
Glycine max
GLYMA10G05880
I
0.763
30078.m002347
Ricinus communis
30078.m002347
I
0.763
AMTR_s00002p00270520
Amborella trichopoda
AMTR_s00002p00270520
I
0.763
POPTR_0002s04880
Populus trichocarpa
POPTR_0002s04880
I
0.763
TCM_022127
Theobroma cacao
TCM_022127
I
0.763
TCM_004271
Theobroma cacao
TCM_004271
I
0.763
Solyc10g084180.1
Solanum lycopersicum
Solyc10g084180.1
I
0.763
PRUPE_ppa004548mg
Prunus persica
PRUPE_ppa004548mg
I
0.763
POPTR_0016s08990
Populus trichocarpa
POPTR_0016s08990
I
0.763
JKD
Vitis vinifera
VIT_08s0040g02100
I
0.763
POPTR_0006s13130
Populus trichocarpa
POPTR_0006s13130
I
0.763
VIT_00s0179g00170
Vitis vinifera
VIT_00s0179g00170
I
0.763
PGSC0003DMG400001747
Solanum tuberosum
PGSC0003DMG400001747
I
0.763
cassava20187.m1
Manihot esculenta
cassava20187.m1
I
0.763
Solyc09g007550.2
Solanum lycopersicum
Solyc09g007550.2
I
0.763
cassava24590.valid.m1
Manihot esculenta
cassava24590.valid.m1
I
0.763
Cagra.1597s0004
Capsella grandiflora
Cagra.1597s0004
I
0.763
Ciclev10011592m.g
Citrus clementina
Ciclev10011592m.g
I
0.763
Ciclev10019959m.g
Citrus clementina
Ciclev10019959m.g
I
0.763
GLYMA13G20231
Glycine max
GLYMA13G20231
I
0.763
Eucgr.A01159
Eucalyptus grandis
Eucgr.A01159
I
0.763
Bostr.2128s0141
Boechera stricta
Bostr.2128s0141
I
0.763
Carubv10000736m.g
Capsella rubella
Carubv10000736m.g
I
0.763
cassava26767.m1
Manihot esculenta
cassava26767.m1
I
0.763
Aquca_027_00051
Aquilegia coerulea
Aquca_027_00051
I
0.763
mgf003691m
Mimulus guttatus
mgf003691m
I
0.763
Aquca_049_00144
Aquilegia coerulea
Aquca_049_00144
I
0.763
GLYMA19G34220
Glycine max
GLYMA19G34220
I
0.762
GLYMA19G42280
Glycine max
GLYMA19G42280
I
0.762
SapurV1A.0697s0070
Salix purpurea
SapurV1A.0697s0070
I
0.759
GSMUA_Achr11G05700_001
Musa acuminata
GSMUA_Achr11G05700_001
I
0.758
GSMUA_Achr4G07200_001
Musa acuminata
GSMUA_Achr4G07200_001
I
0.758
Solyc07g053570.2
Solanum lycopersicum
Solyc07g053570.2
I
0.758
Cucsa.181990
Cucumis sativus
Cucsa.181990
I
0.757
SapurV1A.1019s0030
Salix purpurea
SapurV1A.1019s0030
I
0.757
SapurV1A.2164s0010
Salix purpurea
SapurV1A.2164s0010
I
0.757
id1
Zea mays
GRMZM2G011357
D
0.756
Si036003m.g
Setaria italica
Si036003m.g
I
0.756
Sb01g021480
Sorghum bicolor
Sb01g021480
I
0.756