Eucgr.B03566 (Eucalyptus grandis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Eucgr.B03566 T142837_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD

HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.763 0.829
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG

CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.756 0.732
id1
M10380_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.756 0.732
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B03566.1 C2H2 ZF 82 103
Eucgr.B03566.1 C2H2 ZF 104 128

Links

Other C2H2 ZF family TFs
Other Eucalyptus grandis TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
VIT_09s0054g01820 Vitis vinifera VIT_09s0054g01820 I 0.821
POPTR_0001s12770 Populus trichocarpa POPTR_0001s12770 I 0.821
cassava21529.m1 Manihot esculenta cassava21529.m1 I 0.821
POPTR_0327s00220 Populus trichocarpa POPTR_0327s00220 I 0.821
Gorai.005G198100 Gossypium raimondii Gorai.005G198100 I 0.821
TCM_008261 Theobroma cacao TCM_008261 I 0.821
GLYMA11G15950 Glycine max GLYMA11G15950 I 0.801
30128.m008580 Ricinus communis 30128.m008580 I 0.801
PK25985.1 Cannabis sativa PK25985.1 I 0.796
AtIDD12 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6003159 I 0.796
Cagra.0635s0013 Capsella grandiflora Cagra.0635s0013 I 0.796
PGSC0003DMG400003372 Solanum tuberosum PGSC0003DMG400003372 I 0.796
Carubv10001008m.g Capsella rubella Carubv10001008m.g I 0.796
Bostr.2983s0191 Boechera stricta Bostr.2983s0191 I 0.796
Solyc06g075250.2 Solanum lycopersicum Solyc06g075250.2 I 0.796
ONIVA02G20290 Oryza nivara ONIVA02G20290 I 0.795
OMERI02G18510 Oryza meridionalis OMERI02G18510 I 0.795
OLONG_013811 Oryza longistaminata OLONG_013811 I 0.795
OGLUM02G18620 Oryza glumaepatula OGLUM02G18620 I 0.795
OBART02G18320 Oryza barthii OBART02G18320 I 0.795
OS02G0518500 Oryza sativa OS02G0518500 I 0.795
Si019690m.g Setaria italica Si019690m.g I 0.795
Traes_4DL_DF1F43E16 Triticum aestivum Traes_4DL_DF1F43E16 I 0.795
Traes_4AS_F7A905B43 Triticum aestivum Traes_4AS_F7A905B43 I 0.795
TRIUR3_32694 Triticum urartu TRIUR3_32694 I 0.795
OB02G26130 Oryza brachyantha OB02G26130 I 0.795
ORGLA02G0157900 Oryza glaberrima ORGLA02G0157900 I 0.795
ORUFI02G19290 Oryza rufipogon ORUFI02G19290 I 0.795
Sb04g021440 Sorghum bicolor Sb04g021440 I 0.795
OPUNC02G16560 Oryza punctata OPUNC02G16560 I 0.795
LPERR02G14730 Leersia perrieri LPERR02G14730 I 0.795
Pavir.Ab01787 Panicum virgatum Pavir.Ab01787 I 0.795
GRMZM2G320287 Zea mays GRMZM2G320287 I 0.795
Pavir.Aa01904 Panicum virgatum Pavir.Aa01904 I 0.795
BRADI3G44520 Brachypodium distachyon BRADI3G44520 I 0.795
BGIOSGA006371 Oryza indica BGIOSGA006371 I 0.795
F775_04344 Aegilops tauschii F775_04344 I 0.795
GLYMA12G29370 Glycine max GLYMA12G29370 I 0.792
Traes_4BL_38E55D7B4 Triticum aestivum Traes_4BL_38E55D7B4 I 0.790
PGSC0003DMG400019342 Solanum tuberosum PGSC0003DMG400019342 I 0.788
Solyc09g065670.2 Solanum lycopersicum Solyc09g065670.2 I 0.788
POPTR_0005s23660 Populus trichocarpa POPTR_0005s23660 I 0.782
SapurV1A.0376s0110 Salix purpurea SapurV1A.0376s0110 I 0.782
Eucgr.B01471 Eucalyptus grandis Eucgr.B01471 I 0.782
SapurV1A.0444s0180 Salix purpurea SapurV1A.0444s0180 I 0.782
Lus10007409.g Linum usitatissimum Lus10007409.g I 0.777
Lus10036116.g Linum usitatissimum Lus10036116.g I 0.777
MTR_2g093960 Medicago truncatula MTR_2g093960 I 0.777
mgf001929m Mimulus guttatus mgf001929m I 0.777
GLYMA12G07510 Glycine max GLYMA12G07510 I 0.777
Bo2g167740 Brassica oleracea Bo2g167740 I 0.777
TCM_041053 Theobroma cacao TCM_041053 I 0.772
MDP0000233477 Malus domestica MDP0000233477 I 0.772
orange1.1g011146m.g Citrus sinensis orange1.1g011146m.g I 0.772
Solyc11g069240.1 Solanum lycopersicum Solyc11g069240.1 I 0.772
Gorai.006G120000 Gossypium raimondii Gorai.006G120000 I 0.772
Eucgr.J00939 Eucalyptus grandis Eucgr.J00939 I 0.772
Ciclev10028294m.g Citrus clementina Ciclev10028294m.g I 0.772
cassava6007.valid.m1 Manihot esculenta cassava6007.valid.m1 I 0.772
cassava832.valid.m1 Manihot esculenta cassava832.valid.m1 I 0.772
gene04812-v1.0-hybrid Fragaria vesca gene04812-v1.0-hybrid I 0.772
Gorai.001G131000 Gossypium raimondii Gorai.001G131000 I 0.772
Cla005124 Citrullus lanatus Cla005124 I 0.772
29643.m000323 Ricinus communis 29643.m000323 I 0.772
Cucsa.222420 Cucumis sativus Cucsa.222420 I 0.772
Gorai.004G076800 Gossypium raimondii Gorai.004G076800 I 0.772
VIT_06s0004g03070 Vitis vinifera VIT_06s0004g03070 I 0.772
Ca_14587 Cicer arietinum Ca_14587 I 0.772
MTR_4g059870 Medicago truncatula MTR_4g059870 I 0.772
Solyc02g062940.2 Solanum lycopersicum Solyc02g062940.2 I 0.772
PGSC0003DMG400015498 Solanum tuberosum PGSC0003DMG400015498 I 0.772
PGSC0003DMG400008110 Solanum tuberosum PGSC0003DMG400008110 I 0.772
Bra038293 Brassica rapa Bra038293 I 0.772
BRADI5G08537 Brachypodium distachyon BRADI5G08537 I 0.771
Cucsa.084240 Cucumis sativus Cucsa.084240 I 0.768
gene20264-v1.0-hybrid Fragaria vesca gene20264-v1.0-hybrid I 0.768
Cla015029 Citrullus lanatus Cla015029 I 0.768
Cla018101 Citrullus lanatus Cla018101 I 0.768
Pm030100 Prunus mume Pm030100 I 0.768
Pm020252 Prunus mume Pm020252 I 0.768
MDP0000319344 Malus domestica MDP0000319344 I 0.768
Ca_07799 Cicer arietinum Ca_07799 I 0.768
PK06347.1 Cannabis sativa PK06347.1 I 0.768
PRUPE_ppa005468mg Prunus persica PRUPE_ppa005468mg I 0.768
PRUPE_ppa003849mg Prunus persica PRUPE_ppa003849mg I 0.768
Cucsa.306990 Cucumis sativus Cucsa.306990 I 0.768
Bo9g021710 Brassica oleracea Bo9g021710 I 0.767
mgf017113m Mimulus guttatus mgf017113m I 0.767
GSMUA_Achr11G07460_001 Musa acuminata GSMUA_Achr11G07460_001 I 0.767
LjSGA_017927.1 Lotus japonicus LjSGA_017927.1 I 0.767
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.766
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.766
Bra009549 Brassica rapa Bra009549 I 0.763
MDP0000122321 Malus domestica MDP0000122321 I 0.763
Bra005741 Brassica rapa Bra005741 I 0.763
Gorai.008G002200 Gossypium raimondii Gorai.008G002200 I 0.763
gene09703-v1.0-hybrid Fragaria vesca gene09703-v1.0-hybrid I 0.763
GLYMA10G03541 Glycine max GLYMA10G03541 I 0.763
evm.TU.supercontig_52.117 Carica papaya evm.TU.supercontig_52.117 I 0.763
GLYMA03G31390 Glycine max GLYMA03G31390 I 0.763
JKD Arabidopsis lyrata fgenesh2_kg.6__219__AT5G03150.1 I 0.763
Gorai.009G418600 Gossypium raimondii Gorai.009G418600 I 0.763
Gorai.007G139800 Gossypium raimondii Gorai.007G139800 I 0.763
Gorai.006G167600 Gossypium raimondii Gorai.006G167600 I 0.763
Bra018535 Brassica rapa Bra018535 I 0.763
Bo9g183170 Brassica oleracea Bo9g183170 I 0.763
Thhalv10013267m.g Eutrema salsugineum Thhalv10013267m.g I 0.763
SapurV1A.5138s0010 Salix purpurea SapurV1A.5138s0010 I 0.763
JKD Arabidopsis thaliana AT5G03150 D 0.763
Bo2g003880 Brassica oleracea Bo2g003880 I 0.763
Thhalv10028701m.g Eutrema salsugineum Thhalv10028701m.g I 0.763
PK18288.1 Cannabis sativa PK18288.1 I 0.763
LjT03L03.50.nd Lotus japonicus LjT03L03.50.nd I 0.763
chr1.CM0322.120.nc Lotus japonicus chr1.CM0322.120.nc I 0.763
AMTR_s00007p00061550 Amborella trichopoda AMTR_s00007p00061550 I 0.763
SapurV1A.0209s0070 Salix purpurea SapurV1A.0209s0070 I 0.763
SapurV1A.0112s0130 Salix purpurea SapurV1A.0112s0130 I 0.763
MDP0000826293 Malus domestica MDP0000826293 I 0.763
MDP0000688613 Malus domestica MDP0000688613 I 0.763
MDP0000480293 Malus domestica MDP0000480293 I 0.763
evm.TU.supercontig_45.59 Carica papaya evm.TU.supercontig_45.59 I 0.763
orange1.1g011334m.g Citrus sinensis orange1.1g011334m.g I 0.763
SapurV1A.0006s1510 Salix purpurea SapurV1A.0006s1510 I 0.763
Bo2g100660 Brassica oleracea Bo2g100660 I 0.763
orange1.1g011807m.g Citrus sinensis orange1.1g011807m.g I 0.763
MDP0000243664 Malus domestica MDP0000243664 I 0.763
GLYMA19G36430 Glycine max GLYMA19G36430 I 0.763
Pm001002 Prunus mume Pm001002 I 0.763
Cla018558 Citrullus lanatus Cla018558 I 0.763
Ca_17124 Cicer arietinum Ca_17124 I 0.763
PGSC0003DMG400010478 Solanum tuberosum PGSC0003DMG400010478 I 0.763
29883.m001956 Ricinus communis 29883.m001956 I 0.763
cassava20362.m1 Manihot esculenta cassava20362.m1 I 0.763
GLYMA10G05880 Glycine max GLYMA10G05880 I 0.763
30078.m002347 Ricinus communis 30078.m002347 I 0.763
AMTR_s00002p00270520 Amborella trichopoda AMTR_s00002p00270520 I 0.763
POPTR_0002s04880 Populus trichocarpa POPTR_0002s04880 I 0.763
TCM_022127 Theobroma cacao TCM_022127 I 0.763
TCM_004271 Theobroma cacao TCM_004271 I 0.763
Solyc10g084180.1 Solanum lycopersicum Solyc10g084180.1 I 0.763
PRUPE_ppa004548mg Prunus persica PRUPE_ppa004548mg I 0.763
POPTR_0016s08990 Populus trichocarpa POPTR_0016s08990 I 0.763
JKD Vitis vinifera VIT_08s0040g02100 I 0.763
POPTR_0006s13130 Populus trichocarpa POPTR_0006s13130 I 0.763
VIT_00s0179g00170 Vitis vinifera VIT_00s0179g00170 I 0.763
PGSC0003DMG400001747 Solanum tuberosum PGSC0003DMG400001747 I 0.763
cassava20187.m1 Manihot esculenta cassava20187.m1 I 0.763
Solyc09g007550.2 Solanum lycopersicum Solyc09g007550.2 I 0.763
cassava24590.valid.m1 Manihot esculenta cassava24590.valid.m1 I 0.763
Cagra.1597s0004 Capsella grandiflora Cagra.1597s0004 I 0.763
Ciclev10011592m.g Citrus clementina Ciclev10011592m.g I 0.763
Ciclev10019959m.g Citrus clementina Ciclev10019959m.g I 0.763
GLYMA13G20231 Glycine max GLYMA13G20231 I 0.763
Eucgr.A01159 Eucalyptus grandis Eucgr.A01159 I 0.763
Bostr.2128s0141 Boechera stricta Bostr.2128s0141 I 0.763
Carubv10000736m.g Capsella rubella Carubv10000736m.g I 0.763
cassava26767.m1 Manihot esculenta cassava26767.m1 I 0.763
Aquca_027_00051 Aquilegia coerulea Aquca_027_00051 I 0.763
mgf003691m Mimulus guttatus mgf003691m I 0.763
Aquca_049_00144 Aquilegia coerulea Aquca_049_00144 I 0.763
GLYMA19G34220 Glycine max GLYMA19G34220 I 0.762
GLYMA19G42280 Glycine max GLYMA19G42280 I 0.762
SapurV1A.0697s0070 Salix purpurea SapurV1A.0697s0070 I 0.759
GSMUA_Achr11G05700_001 Musa acuminata GSMUA_Achr11G05700_001 I 0.758
GSMUA_Achr4G07200_001 Musa acuminata GSMUA_Achr4G07200_001 I 0.758
Solyc07g053570.2 Solanum lycopersicum Solyc07g053570.2 I 0.758
Cucsa.181990 Cucumis sativus Cucsa.181990 I 0.757
SapurV1A.1019s0030 Salix purpurea SapurV1A.1019s0030 I 0.757
SapurV1A.2164s0010 Salix purpurea SapurV1A.2164s0010 I 0.757
id1 Zea mays GRMZM2G011357 D 0.756
Si036003m.g Setaria italica Si036003m.g I 0.756
Sb01g021480 Sorghum bicolor Sb01g021480 I 0.756