gene02558-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene02558-v1.0-hybrid T142941_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.822 0.913
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.803 0.935
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.799 0.717
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.799 0.696
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.796 0.870
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.796 0.870
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.796 0.870
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.787 0.804
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.787 0.804
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna02558.1-v1.0-hybrid C2H2 ZF 101 123
mrna02558.1-v1.0-hybrid C2H2 ZF 158 180

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_05949 Aegilops tauschii F775_05949 I 0.000
AMTR_s00010p00266320 Amborella trichopoda AMTR_s00010p00266320 I 0.000
AMTR_s00025p00174590 Amborella trichopoda AMTR_s00025p00174590 I 0.000
AMTR_s00079p00099620 Amborella trichopoda AMTR_s00079p00099620 I 0.000
Aquca_018_00116 Aquilegia coerulea Aquca_018_00116 I 0.000
Aquca_026_00305 Aquilegia coerulea Aquca_026_00305 I 0.000
Aquca_033_00035 Aquilegia coerulea Aquca_033_00035 I 0.000
ANAC039 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4000352 I 0.000
anac058 Arabidopsis lyrata Al_scaffold_0003_1942 I 0.000
CUC2 Arabidopsis lyrata Al_scaffold_0008_1815 I 0.000
NAC098 Arabidopsis thaliana AT5G53950 D 0.000
anac058 Arabidopsis thaliana AT3G18400 D 0.000
ANAC038 Arabidopsis thaliana AT2G24430 D 0.000
Bostr.26675s0262 Boechera stricta Bostr.26675s0262 I 0.000
Bostr.26833s0880 Boechera stricta Bostr.26833s0880 I 0.000
Bostr.19424s0822 Boechera stricta Bostr.19424s0822 I 0.000
Bostr.27895s0039 Boechera stricta Bostr.27895s0039 I 0.000
BRADI1G14467 Brachypodium distachyon BRADI1G14467 I 0.000
Bo1g117610 Brassica oleracea Bo1g117610 I 0.000
Bo01320s020 Brassica oleracea Bo01320s020 I 0.000
Bo2g043280 Brassica oleracea Bo2g043280 I 0.000
Bo3g071500 Brassica oleracea Bo3g071500 I 0.000
Bo9g113820 Brassica oleracea Bo9g113820 I 0.000
Bo8g099810 Brassica oleracea Bo8g099810 I 0.000
Bra003023 Brassica rapa Bra003023 I 0.000
Bra007855 Brassica rapa Bra007855 I 0.000
Bra022319 Brassica rapa Bra022319 I 0.000
Bra001705 Brassica rapa Bra001705 I 0.000
Bra037585 Brassica rapa Bra037585 I 0.000
Bra032095 Brassica rapa Bra032095 I 0.000
Bra022685 Brassica rapa Bra022685 I 0.000
PK02366.1 Cannabis sativa PK02366.1 I 0.000
PK13860.1 Cannabis sativa PK13860.1 I 0.000
Cagra.4622s0005 Capsella grandiflora Cagra.4622s0005 I 0.000
Cagra.1681s0009 Capsella grandiflora Cagra.1681s0009 I 0.000
Cagra.4091s0015 Capsella grandiflora Cagra.4091s0015 I 0.000
Carubv10028330m.g Capsella rubella Carubv10028330m.g I 0.000
Carubv10015990m.g Capsella rubella Carubv10015990m.g I 0.000
Carubv10025508m.g Capsella rubella Carubv10025508m.g I 0.000
evm.TU.supercontig_244.7 Carica papaya evm.TU.supercontig_244.7 I 0.000
evm.TU.supercontig_3.509 Carica papaya evm.TU.supercontig_3.509 I 0.000
Ca_11021 Cicer arietinum Ca_11021 I 0.000
Cla022572 Citrullus lanatus Cla022572 I 0.000
Cla019391 Citrullus lanatus Cla019391 I 0.000
Ciclev10008885m.g Citrus clementina Ciclev10008885m.g I 0.000
Ciclev10023578m.g Citrus clementina Ciclev10023578m.g I 0.000
Ciclev10020480m.g Citrus clementina Ciclev10020480m.g I 0.000
orange1.1g017827m.g Citrus sinensis orange1.1g017827m.g I 0.000
orange1.1g037591m.g Citrus sinensis orange1.1g037591m.g I 0.000
Cucsa.161510 Cucumis sativus Cucsa.161510 I 0.000
Cucsa.197830 Cucumis sativus Cucsa.197830 I 0.000
Eucgr.C02105 Eucalyptus grandis Eucgr.C02105 I 0.000
Eucgr.B00529 Eucalyptus grandis Eucgr.B00529 I 0.000
Eucgr.B00724 Eucalyptus grandis Eucgr.B00724 I 0.000
Eucgr.K02225 Eucalyptus grandis Eucgr.K02225 I 0.000
Thhalv10011708m.g Eutrema salsugineum Thhalv10011708m.g I 0.000
Thhalv10000520m.g Eutrema salsugineum Thhalv10000520m.g I 0.000
Thhalv10021200m.g Eutrema salsugineum Thhalv10021200m.g I 0.000
Thhalv10013863m.g Eutrema salsugineum Thhalv10013863m.g I 0.000
gene08765-v1.0-hybrid Fragaria vesca gene08765-v1.0-hybrid I 0.000
gene26043-v1.0-hybrid Fragaria vesca gene26043-v1.0-hybrid I 0.000
gene00971-v1.0-hybrid Fragaria vesca gene00971-v1.0-hybrid I 0.000
GLYMA04G08320 Glycine max GLYMA04G08320 I 0.000
GLYMA14G20276 Glycine max GLYMA14G20276 I 0.000
GLYMA06G08440 Glycine max GLYMA06G08440 I 0.000
Gorai.010G124100 Gossypium raimondii Gorai.010G124100 I 0.000
Gorai.007G323900 Gossypium raimondii Gorai.007G323900 I 0.000
Gorai.006G060900 Gossypium raimondii Gorai.006G060900 I 0.000
MLOC_68284 Hordeum vulgare MLOC_68284 I 0.000
LPERR09G11330 Leersia perrieri LPERR09G11330 I 0.000
LPERR03G21900 Leersia perrieri LPERR03G21900 I 0.000
Lus10027227.g Linum usitatissimum Lus10027227.g I 0.000
Lus10001648.g Linum usitatissimum Lus10001648.g I 0.000
Lus10009029.g Linum usitatissimum Lus10009029.g I 0.000
Lus10020165.g Linum usitatissimum Lus10020165.g I 0.000
Lus10021659.g Linum usitatissimum Lus10021659.g I 0.000
Lus10026966.g Linum usitatissimum Lus10026966.g I 0.000
Lus10038937.g Linum usitatissimum Lus10038937.g I 0.000
chr1.LjT35C22.60.nc Lotus japonicus chr1.LjT35C22.60.nc I 0.000
chr3.CM0282.730.nc Lotus japonicus chr3.CM0282.730.nc I 0.000
MDP0000911724 Malus domestica MDP0000911724 I 0.000
MDP0000690168 Malus domestica MDP0000690168 I 0.000
MDP0000246482 Malus domestica MDP0000246482 I 0.000
MDP0000232008 Malus domestica MDP0000232008 I 0.000
MDP0000153949 Malus domestica MDP0000153949 I 0.000
cassava2919.m1 Manihot esculenta cassava2919.m1 I 0.000
cassava17517.valid.m1 Manihot esculenta cassava17517.valid.m1 I 0.000
cassava18338.valid.m1 Manihot esculenta cassava18338.valid.m1 I 0.000
cassava9086.m1 Manihot esculenta cassava9086.m1 I 0.000
cassava46147.m1 Manihot esculenta cassava46147.m1 I 0.000
MTR_4g108760 Medicago truncatula MTR_4g108760 I 0.000
MTR_3g109340 Medicago truncatula MTR_3g109340 I 0.000
MTR_2g078700 Medicago truncatula MTR_2g078700 I 0.000
mgf021065m Mimulus guttatus mgf021065m I 0.000
mgf025158m Mimulus guttatus mgf025158m I 0.000
mgf021404m Mimulus guttatus mgf021404m I 0.000
GSMUA_Achr8G18420_001 Musa acuminata GSMUA_Achr8G18420_001 I 0.000
GSMUA_Achr10G19900_001 Musa acuminata GSMUA_Achr10G19900_001 I 0.000
GSMUA_Achr7G19680_001 Musa acuminata GSMUA_Achr7G19680_001 I 0.000
OBART09G15220 Oryza barthii OBART09G15220 I 0.000
OBART03G26480 Oryza barthii OBART03G26480 I 0.000
OB03G34470 Oryza brachyantha OB03G34470 I 0.000
ORGLA03G0246300 Oryza glaberrima ORGLA03G0246300 I 0.000
ORGLA09G0117400 Oryza glaberrima ORGLA09G0117400 I 0.000
OGLUM09G15820 Oryza glumaepatula OGLUM09G15820 I 0.000
OGLUM03G27330 Oryza glumaepatula OGLUM03G27330 I 0.000
BGIOSGA029508 Oryza indica BGIOSGA029508 I 0.000
BGIOSGA013151 Oryza indica BGIOSGA013151 I 0.000
OLONG_009674 Oryza longistaminata OLONG_009674 I 0.000
OMERI07G04410 Oryza meridionalis OMERI07G04410 I 0.000
OMERI03G23890 Oryza meridionalis OMERI03G23890 I 0.000
ONIVA03G27500 Oryza nivara ONIVA03G27500 I 0.000
ONIVA09G15800 Oryza nivara ONIVA09G15800 I 0.000
OPUNC09G13640 Oryza punctata OPUNC09G13640 I 0.000
OPUNC03G24220 Oryza punctata OPUNC03G24220 I 0.000
ORUFI03G27440 Oryza rufipogon ORUFI03G27440 I 0.000
ORUFI09G16430 Oryza rufipogon ORUFI09G16430 I 0.000
OS03G0624600 Oryza sativa OS03G0624600 I 0.000
OS09G0497900 Oryza sativa OS09G0497900 I 0.000
Pavir.J02772 Panicum virgatum Pavir.J02772 I 0.000
Pavir.Ib03976 Panicum virgatum Pavir.Ib03976 I 0.000
Pavir.Ia01262 Panicum virgatum Pavir.Ia01262 I 0.000
POPTR_0006s29180 Populus trichocarpa POPTR_0006s29180 I 0.000
POPTR_0012s01610 Populus trichocarpa POPTR_0012s01610 I 0.000
POPTR_0015s02170 Populus trichocarpa POPTR_0015s02170 I 0.000
POPTR_0018s03910 Populus trichocarpa POPTR_0018s03910 I 0.000
POPTR_0015s03700 Populus trichocarpa POPTR_0015s03700 I 0.000
POPTR_0011s11600 Populus trichocarpa POPTR_0011s11600 I 0.000
POPTR_0012s05280 Populus trichocarpa POPTR_0012s05280 I 0.000
Pm024887 Prunus mume Pm024887 I 0.000
Pm005091 Prunus mume Pm005091 I 0.000
PRUPE_ppa025916mg Prunus persica PRUPE_ppa025916mg I 0.000
PRUPE_ppa007653mg Prunus persica PRUPE_ppa007653mg I 0.000
28226.m000851 Ricinus communis 28226.m000851 I 0.000
29974.m000235 Ricinus communis 29974.m000235 I 0.000
30138.m004055 Ricinus communis 30138.m004055 I 0.000
SapurV1A.2059s0010 Salix purpurea SapurV1A.2059s0010 I 0.000
SapurV1A.1363s0020 Salix purpurea SapurV1A.1363s0020 I 0.000
SapurV1A.1381s0060 Salix purpurea SapurV1A.1381s0060 I 0.000
SapurV1A.0263s0310 Salix purpurea SapurV1A.0263s0310 I 0.000
SapurV1A.0346s0160 Salix purpurea SapurV1A.0346s0160 I 0.000
SapurV1A.1381s0050 Salix purpurea SapurV1A.1381s0050 I 0.000
SapurV1A.0377s0130 Salix purpurea SapurV1A.0377s0130 I 0.000
SapurV1A.0719s0060 Salix purpurea SapurV1A.0719s0060 I 0.000
SapurV1A.1325s0010 Salix purpurea SapurV1A.1325s0010 I 0.000
SapurV1A.1285s0100 Salix purpurea SapurV1A.1285s0100 I 0.000
SapurV1A.1146s0010 Salix purpurea SapurV1A.1146s0010 I 0.000
SELMODRAFT_67245 Selaginella moellendorffii SELMODRAFT_67245 I 0.000
SELMODRAFT_71303 Selaginella moellendorffii SELMODRAFT_71303 I 0.000
Si030187m.g Setaria italica Si030187m.g I 0.000
Si036535m.g Setaria italica Si036535m.g I 0.000
Solyc06g069100.1 Solanum lycopersicum Solyc06g069100.1 I 0.000
Solyc06g069710.2 Solanum lycopersicum Solyc06g069710.2 I 0.000
Solyc12g036480.1 Solanum lycopersicum Solyc12g036480.1 I 0.000
Solyc08g006020.2 Solanum lycopersicum Solyc08g006020.2 I 0.000
Solyc07g062840.2 Solanum lycopersicum Solyc07g062840.2 I 0.000
Solyc03g115850.2 Solanum lycopersicum Solyc03g115850.2 I 0.000
PGSC0003DMG400019523 Solanum tuberosum PGSC0003DMG400019523 I 0.000
PGSC0003DMG400014845 Solanum tuberosum PGSC0003DMG400014845 I 0.000
PGSC0003DMG400005384 Solanum tuberosum PGSC0003DMG400005384 I 0.000
PGSC0003DMG400029593 Solanum tuberosum PGSC0003DMG400029593 I 0.000
PGSC0003DMG400033047 Solanum tuberosum PGSC0003DMG400033047 I 0.000
PGSC0003DMG400028779 Solanum tuberosum PGSC0003DMG400028779 I 0.000
Sb01g014310 Sorghum bicolor Sb01g014310 I 0.000
Sb02g028870 Sorghum bicolor Sb02g028870 I 0.000
TCM_012350 Theobroma cacao TCM_012350 I 0.000
TCM_036791 Theobroma cacao TCM_036791 I 0.000
Traes_4BS_373BDBA94 Triticum aestivum Traes_4BS_373BDBA94 I 0.000
Traes_4AL_B44DF4ACC Triticum aestivum Traes_4AL_B44DF4ACC I 0.000
TRIUR3_27612 Triticum urartu TRIUR3_27612 I 0.000
ANAC039 Vitis vinifera VIT_04s0008g02710 I 0.000
anac058 Vitis vinifera VIT_17s0000g03660 I 0.000
GRMZM2G386163 Zea mays GRMZM2G386163 I 0.000