gene05263-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene05263-v1.0-hybrid T142948_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.764 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05263.1-v1.0-hybrid C2H2 ZF 58 80

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB09G17800 Oryza brachyantha OB09G17800 I 0.815
OBART09G11250 Oryza barthii OBART09G11250 I 0.815
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.815
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.815
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.815
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.815
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.815
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.815
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.815
OS09G0431900 Oryza sativa OS09G0431900 I 0.815
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.815
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.815
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.815
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.815
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.815
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.815
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.815
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.800
Bo2g155500 Brassica oleracea Bo2g155500 N 0.800
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N 0.800
Bo9g011450 Brassica oleracea Bo9g011450 I 0.779
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.779
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I 0.776
LPERR08G07840 Leersia perrieri LPERR08G07840 I 0.776
TCM_044725 Theobroma cacao TCM_044725 I 0.776
GLYMA06G14783 Glycine max GLYMA06G14783 I 0.776
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I 0.776
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I 0.776
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.769
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.769
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.769
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I 0.769
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.769
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.769
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.769
F775_42450 Aegilops tauschii F775_42450 I 0.769
MDP0000165710 Malus domestica MDP0000165710 I 0.769
Si037914m.g Setaria italica Si037914m.g I 0.769
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.769
MDP0000121370 Malus domestica MDP0000121370 I 0.769
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I 0.767
Pavir.J36164 Panicum virgatum Pavir.J36164 I 0.767
Sb02g025390 Sorghum bicolor Sb02g025390 I 0.767
Si031489m.g Setaria italica Si031489m.g I 0.767
F775_01070 Aegilops tauschii F775_01070 I 0.767
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I 0.767
GRMZM2G108818 Zea mays GRMZM2G108818 I 0.767
GRMZM2G037574 Zea mays GRMZM2G037574 I 0.767
Sb01g034110 Sorghum bicolor Sb01g034110 I 0.766
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.766
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.766
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.766
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.766
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.766
Bo2g007320 Brassica oleracea Bo2g007320 I 0.766
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.766
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.766
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.766
Bra028724 Brassica rapa Bra028724 I 0.766
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.766
Bo9g166240 Brassica oleracea Bo9g166240 I 0.766
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.766
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.766
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I 0.766
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I 0.766
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.766
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.766
GRMZM2G115388 Zea mays GRMZM2G115388 I 0.766
GRMZM2G403590 Zea mays GRMZM2G403590 I 0.766
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I 0.766
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.766
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.766
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.766
Bra008787 Brassica rapa Bra008787 I 0.766
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.766
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I 0.766
GIS2 Arabidopsis thaliana AT5G06650 I 0.766
Pm008291 Prunus mume Pm008291 I 0.766
TRIUR3_34498 Triticum urartu TRIUR3_34498 I 0.766
PK10012.1 Cannabis sativa PK10012.1 I 0.766
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.766
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.766
ZFP5 Arabidopsis thaliana AT1G10480 D 0.764
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.764
Bo8g109510 Brassica oleracea Bo8g109510 I 0.764
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.764
Ca_08116 Cicer arietinum Ca_08116 I 0.764
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I 0.764
Si028367m.g Setaria italica Si028367m.g I 0.764
30045.m000471 Ricinus communis 30045.m000471 I 0.764
cassava44297.m1 Manihot esculenta cassava44297.m1 I 0.764
Carubv10003685m.g Capsella rubella Carubv10003685m.g I 0.764
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I 0.764
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.764
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.764
F775_05447 Aegilops tauschii F775_05447 N 0.762
MLOC_38864 Hordeum vulgare MLOC_38864 N 0.762
TRIUR3_30765 Triticum urartu TRIUR3_30765 N 0.761
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.757