gene18204-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene18204-v1.0-hybrid T142963_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.800 0.826
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.795 0.826
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.795 0.826
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.786 0.761
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.786 0.761
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.774 0.674
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.771 0.761
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.763 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18204.1-v1.0-hybrid C2H2 ZF 69 91
mrna18204.1-v1.0-hybrid C2H2 ZF 118 140

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

391 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BOTBODRAFT_174790 Botryobasidium botryosum BOTBODRAFT_174790 N 0.000
CERSUDRAFT_117628 Ceriporiopsis subvermispora CERSUDRAFT_117628 N 0.000
DACRYDRAFT_93284 Dacryopinax sp DACRYDRAFT_93284 N 0.000
FIBRA_06476 Fibroporia radiculosa FIBRA_06476 N 0.000
FOMPIDRAFT_1111238 Fomitopsis pinicola FOMPIDRAFT_1111238 N 0.000
GLOTRDRAFT_139468 Gloeophyllum trabeum GLOTRDRAFT_139468 N 0.000
HETIRDRAFT_458619 Heterobasidion irregulare HETIRDRAFT_458619 N 0.000
JAAARDRAFT_35789 Jaapia argillacea JAAARDRAFT_35789 N 0.000
PHACADRAFT_182583 Phanerochaete carnosa PHACADRAFT_182583 N 0.000
fgenesh1_pg.C_scaffold_7000002 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000002 N 0.000
PHLGIDRAFT_92699 Phlebiopsis gigantea PHLGIDRAFT_92699 N 0.000
PIIN_05831 Piriformospora indica PIIN_05831 N 0.000
POSPLDRAFT_99485 Postia placenta POSPLDRAFT_99485 N 0.000
V565_049200 Rhizoctonia solani V565_049200 N 0.000
BN946_scf184980.g5 Trametes cinnabarina BN946_scf184980.g5 N 0.000
J056_004240 Wallemia ichthyophaga J056_004240 N 0.000
WALSEDRAFT_27562 Wallemia sebi WALSEDRAFT_27562 N 0.000