gene18205-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene18205-v1.0-hybrid T142964_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.801 0.804
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.797 0.826
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.797 0.826
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.786 0.804
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.786 0.804
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.776 0.739
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.771 0.761
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.763 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18205.1-v1.0-hybrid C2H2 ZF 39 61
mrna18205.1-v1.0-hybrid C2H2 ZF 88 110

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

392 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ARB_02051 Arthroderma benhamiae ARB_02051 I 0.000
H101_05693 Trichophyton interdigitale H101_05693 I 0.000
H102_07567 Trichophyton rubrum H102_07567 I 0.000
H105_07594 Trichophyton soudanense H105_07594 I 0.000
MGYG_01329 Microsporum gypseum MGYG_01329 I 0.000
TEQG_05503 Trichophyton equinum TEQG_05503 I 0.000
TESG_05743 Trichophyton tonsurans TESG_05743 I 0.000
TRIATDRAFT_41041 Trichoderma atroviride TRIATDRAFT_41041 N 0.000
TRIVIDRAFT_57711 Trichoderma virens TRIVIDRAFT_57711 N 0.000
TRV_05879 Trichophyton verrucosum TRV_05879 I 0.000