Gorai.001G049300 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.001G049300 T142985_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.766 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G049300.1 C2H2 ZF 153 175
Gorai.001G049300.1 C2H2 ZF 205 227

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_014903 Theobroma cacao TCM_014903 I 0.811
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.772
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.766
ZAT4 Arabidopsis thaliana AT2G45120 D 0.766
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.766
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I 0.766
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.766
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.766
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.766
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.766
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.766
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.766
Ca_23672 Cicer arietinum Ca_23672 I 0.766
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.766
ZAT9 Arabidopsis thaliana AT3G60580 D 0.766
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.766
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.766
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.766
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.766
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.766
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.766
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.766
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.765
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.761
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.761
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.761
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.761
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.761
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.761
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.758
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.758
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.757
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.757
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.757
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.757