CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.001G049300
(
Gossypium raimondii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gorai.001G049300
T142985_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.766
0.717
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.766
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.001G049300.1
C2H2 ZF
153
175
YKCETCNITFRSHQALGGHTASH
Gorai.001G049300.1
C2H2 ZF
205
227
FECEFCDRVFQSGQALGGHKKIH
Links
Other
C2H2 ZF
family TFs
Other
Gossypium raimondii
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy