Gorai.005G134600 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.005G134600 T143013_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.886
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.886
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G134600.1 C2H2 ZF 134 155
Gorai.005G134600.1 C2H2 ZF 155 183

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_039880 Theobroma cacao TCM_039880 I 0.822
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.822
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.822
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.818
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.818
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.818
Pm005926 Prunus mume Pm005926 I 0.818
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.818
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.818
Ca_05083 Cicer arietinum Ca_05083 I 0.818
Pm025274 Prunus mume Pm025274 I 0.818
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.818
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.818
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.818
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.818
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.818
PK25720.1 Cannabis sativa PK25720.1 I 0.818
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.818
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.818
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.812
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.812
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.812
Cla018945 Citrullus lanatus Cla018945 I 0.812
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.812
TCM_011210 Theobroma cacao TCM_011210 I 0.812
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.812
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.812
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.812
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.812
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.812
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.812
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.812
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.812
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.812
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.812
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.812
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.812
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.812
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.812
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.812
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.812
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.812
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.812
28952.m000016 Ricinus communis 28952.m000016 I 0.812
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.812
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.812
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.812
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.812
Bra024841 Brassica rapa Bra024841 I 0.812
Bra024771 Brassica rapa Bra024771 I 0.811
Bo5g043540 Brassica oleracea Bo5g043540 I 0.811
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.808
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.808
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.806
Bra026624 Brassica rapa Bra026624 I 0.806
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.806
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.806
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.806
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.806
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.806
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.806
F775_43255 Aegilops tauschii F775_43255 I 0.806
Bra017432 Brassica rapa Bra017432 I 0.806
SGR5 Arabidopsis thaliana AT2G01940 D 0.806
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.806
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.806
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.806
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.806
Bo2g134790 Brassica oleracea Bo2g134790 I 0.806
Bra010981 Brassica rapa Bra010981 I 0.806
Bo9g070370 Brassica oleracea Bo9g070370 I 0.806
Bo3g139880 Brassica oleracea Bo3g139880 I 0.806
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.806
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.806
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.806
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.806
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.806
OB09G18760 Oryza brachyantha OB09G18760 I 0.806
Ca_22171 Cicer arietinum Ca_22171 I 0.806
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.806
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.806
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.806
OS03G0237250 Oryza sativa OS03G0237250 I 0.806
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.806
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.806
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.806
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.806
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.806
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.806
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.806
mgf008235m Mimulus guttatus mgf008235m I 0.806
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.806
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.806
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.806
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.806
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.806
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.794
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.794
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.788
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.788
Cla005913 Citrullus lanatus Cla005913 I 0.788
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I 0.784
IDD14 Arabidopsis thaliana AT1G68130 I 0.782
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.782
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.782
Bo6g097320 Brassica oleracea Bo6g097320 I 0.782
Bra004283 Brassica rapa Bra004283 I 0.782
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.782
Bra004050 Brassica rapa Bra004050 I 0.782
Bo6g106560 Brassica oleracea Bo6g106560 I 0.782
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.782
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.782
PK17145.1 Cannabis sativa PK17145.1 I 0.777
estExt_Genewise1.C_2180024 Physcomitrella patens estExt_Genewise1.C_2180024 N 0.765