Gorai.005G154300 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.005G154300 T143014_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.773 0.927
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.773 0.927
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G154300.1 C2H2 ZF 134 155
Gorai.005G154300.1 C2H2 ZF 156 180

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.794
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.794
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.794
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.794
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.794
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.794
Pm025274 Prunus mume Pm025274 I 0.794
Ca_05083 Cicer arietinum Ca_05083 I 0.794
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.794
Cla018945 Citrullus lanatus Cla018945 I 0.788
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.788
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.788
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.788
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.788
28952.m000016 Ricinus communis 28952.m000016 I 0.788
TCM_011210 Theobroma cacao TCM_011210 I 0.788
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.788
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.788
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.788
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.788
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.788
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.788
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.788
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.788
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.788
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.788
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.788
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.788
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.788
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.788
PK25720.1 Cannabis sativa PK25720.1 I 0.784
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.784
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.784
Pm005926 Prunus mume Pm005926 I 0.784
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.784
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.784
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.784
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.784
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.782
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.782
Ca_22171 Cicer arietinum Ca_22171 I 0.782
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.782
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.782
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.782
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.782
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.782
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.782
mgf008235m Mimulus guttatus mgf008235m I 0.782
F775_43255 Aegilops tauschii F775_43255 I 0.782
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.782
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.782
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.782
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.782
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.782
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.782
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.782
OS03G0237250 Oryza sativa OS03G0237250 I 0.782
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.782
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.782
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.779
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.779
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.779
Bra024841 Brassica rapa Bra024841 I 0.779
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.779
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.779
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.779
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.779
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.779
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.779
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.779
TCM_039880 Theobroma cacao TCM_039880 I 0.779
Bra024771 Brassica rapa Bra024771 I 0.778
Bo5g043540 Brassica oleracea Bo5g043540 I 0.778
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.774
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.774
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.773
Bo9g070370 Brassica oleracea Bo9g070370 I 0.773
SGR5 Arabidopsis thaliana AT2G01940 D 0.773
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.773
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.773
Bo2g134790 Brassica oleracea Bo2g134790 I 0.773
Bo3g139880 Brassica oleracea Bo3g139880 I 0.773
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.773
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.773
Bra010981 Brassica rapa Bra010981 I 0.773
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.773
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.773
OB09G18760 Oryza brachyantha OB09G18760 I 0.773
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.773
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.773
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.773
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.773
Bra017432 Brassica rapa Bra017432 I 0.773
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.773
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.773
Bra026624 Brassica rapa Bra026624 I 0.773
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.773
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.765
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.760
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.760