CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gorai.005G198100
(
Gossypium raimondii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gorai.005G198100
T143016_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.769
0.878
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG
CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.762
0.756
id1
M10380_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.762
0.756
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G198100.1
C2H2 ZF
154
175
WKCDKCSKRYAVQSDWKAHAKI
Gorai.005G198100.1
C2H2 ZF
176
200
CGTREYRCDCGTIFSRKDSFVTHRA
Links
Other
C2H2 ZF
family TFs
Other
Gossypium raimondii
TFs
178 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0001s12770
Populus trichocarpa
POPTR_0001s12770
I
0.827
VIT_09s0054g01820
Vitis vinifera
VIT_09s0054g01820
I
0.827
TCM_008261
Theobroma cacao
TCM_008261
I
0.827
POPTR_0327s00220
Populus trichocarpa
POPTR_0327s00220
I
0.827
cassava21529.m1
Manihot esculenta
cassava21529.m1
I
0.827
Eucgr.B03566
Eucalyptus grandis
Eucgr.B03566
I
0.821
GLYMA11G15950
Glycine max
GLYMA11G15950
I
0.807
30128.m008580
Ricinus communis
30128.m008580
I
0.807
PGSC0003DMG400003372
Solanum tuberosum
PGSC0003DMG400003372
I
0.802
AtIDD12
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_6003159
I
0.802
PK25985.1
Cannabis sativa
PK25985.1
I
0.802
Carubv10001008m.g
Capsella rubella
Carubv10001008m.g
I
0.802
Cagra.0635s0013
Capsella grandiflora
Cagra.0635s0013
I
0.802
Bostr.2983s0191
Boechera stricta
Bostr.2983s0191
I
0.802
Solyc06g075250.2
Solanum lycopersicum
Solyc06g075250.2
I
0.802
OLONG_013811
Oryza longistaminata
OLONG_013811
I
0.801
OGLUM02G18620
Oryza glumaepatula
OGLUM02G18620
I
0.801
OBART02G18320
Oryza barthii
OBART02G18320
I
0.801
OB02G26130
Oryza brachyantha
OB02G26130
I
0.801
ORGLA02G0157900
Oryza glaberrima
ORGLA02G0157900
I
0.801
Traes_4DL_DF1F43E16
Triticum aestivum
Traes_4DL_DF1F43E16
I
0.801
Traes_4AS_F7A905B43
Triticum aestivum
Traes_4AS_F7A905B43
I
0.801
Sb04g021440
Sorghum bicolor
Sb04g021440
I
0.801
Si019690m.g
Setaria italica
Si019690m.g
I
0.801
TRIUR3_32694
Triticum urartu
TRIUR3_32694
I
0.801
OS02G0518500
Oryza sativa
OS02G0518500
I
0.801
ONIVA02G20290
Oryza nivara
ONIVA02G20290
I
0.801
OPUNC02G16560
Oryza punctata
OPUNC02G16560
I
0.801
ORUFI02G19290
Oryza rufipogon
ORUFI02G19290
I
0.801
OMERI02G18510
Oryza meridionalis
OMERI02G18510
I
0.801
LPERR02G14730
Leersia perrieri
LPERR02G14730
I
0.801
Pavir.Ab01787
Panicum virgatum
Pavir.Ab01787
I
0.801
BRADI3G44520
Brachypodium distachyon
BRADI3G44520
I
0.801
F775_04344
Aegilops tauschii
F775_04344
I
0.801
BGIOSGA006371
Oryza indica
BGIOSGA006371
I
0.801
Pavir.Aa01904
Panicum virgatum
Pavir.Aa01904
I
0.801
GRMZM2G320287
Zea mays
GRMZM2G320287
I
0.801
GLYMA12G29370
Glycine max
GLYMA12G29370
I
0.798
Traes_4BL_38E55D7B4
Triticum aestivum
Traes_4BL_38E55D7B4
I
0.796
PGSC0003DMG400019342
Solanum tuberosum
PGSC0003DMG400019342
I
0.794
Solyc09g065670.2
Solanum lycopersicum
Solyc09g065670.2
I
0.794
POPTR_0005s23660
Populus trichocarpa
POPTR_0005s23660
I
0.788
Eucgr.B01471
Eucalyptus grandis
Eucgr.B01471
I
0.788
SapurV1A.0444s0180
Salix purpurea
SapurV1A.0444s0180
I
0.788
SapurV1A.0376s0110
Salix purpurea
SapurV1A.0376s0110
I
0.788
Lus10007409.g
Linum usitatissimum
Lus10007409.g
I
0.784
Lus10036116.g
Linum usitatissimum
Lus10036116.g
I
0.784
Bo2g167740
Brassica oleracea
Bo2g167740
I
0.784
MTR_2g093960
Medicago truncatula
MTR_2g093960
I
0.784
GLYMA12G07510
Glycine max
GLYMA12G07510
I
0.784
mgf001929m
Mimulus guttatus
mgf001929m
I
0.784
orange1.1g011146m.g
Citrus sinensis
orange1.1g011146m.g
I
0.778
Solyc02g062940.2
Solanum lycopersicum
Solyc02g062940.2
I
0.778
Solyc11g069240.1
Solanum lycopersicum
Solyc11g069240.1
I
0.778
TCM_041053
Theobroma cacao
TCM_041053
I
0.778
Cla005124
Citrullus lanatus
Cla005124
I
0.778
Eucgr.J00939
Eucalyptus grandis
Eucgr.J00939
I
0.778
gene04812-v1.0-hybrid
Fragaria vesca
gene04812-v1.0-hybrid
I
0.778
Ciclev10028294m.g
Citrus clementina
Ciclev10028294m.g
I
0.778
Cucsa.222420
Cucumis sativus
Cucsa.222420
I
0.778
cassava6007.valid.m1
Manihot esculenta
cassava6007.valid.m1
I
0.778
Gorai.001G131000
Gossypium raimondii
Gorai.001G131000
I
0.778
Gorai.004G076800
Gossypium raimondii
Gorai.004G076800
I
0.778
Ca_14587
Cicer arietinum
Ca_14587
I
0.778
cassava832.valid.m1
Manihot esculenta
cassava832.valid.m1
I
0.778
Gorai.006G120000
Gossypium raimondii
Gorai.006G120000
I
0.778
29643.m000323
Ricinus communis
29643.m000323
I
0.778
MDP0000233477
Malus domestica
MDP0000233477
I
0.778
VIT_06s0004g03070
Vitis vinifera
VIT_06s0004g03070
I
0.778
PGSC0003DMG400008110
Solanum tuberosum
PGSC0003DMG400008110
I
0.778
PGSC0003DMG400015498
Solanum tuberosum
PGSC0003DMG400015498
I
0.778
Bra038293
Brassica rapa
Bra038293
I
0.778
MTR_4g059870
Medicago truncatula
MTR_4g059870
I
0.778
BRADI5G08537
Brachypodium distachyon
BRADI5G08537
I
0.777
Cla015029
Citrullus lanatus
Cla015029
I
0.774
Ca_07799
Cicer arietinum
Ca_07799
I
0.774
gene20264-v1.0-hybrid
Fragaria vesca
gene20264-v1.0-hybrid
I
0.774
Cla018101
Citrullus lanatus
Cla018101
I
0.774
MDP0000319344
Malus domestica
MDP0000319344
I
0.774
Cucsa.084240
Cucumis sativus
Cucsa.084240
I
0.774
GSMUA_Achr11G07460_001
Musa acuminata
GSMUA_Achr11G07460_001
I
0.774
PK06347.1
Cannabis sativa
PK06347.1
I
0.774
Pm030100
Prunus mume
Pm030100
I
0.774
Cucsa.306990
Cucumis sativus
Cucsa.306990
I
0.774
Pm020252
Prunus mume
Pm020252
I
0.774
PRUPE_ppa005468mg
Prunus persica
PRUPE_ppa005468mg
I
0.774
PRUPE_ppa003849mg
Prunus persica
PRUPE_ppa003849mg
I
0.774
Bo9g021710
Brassica oleracea
Bo9g021710
I
0.773
mgf017113m
Mimulus guttatus
mgf017113m
I
0.773
LjSGA_017927.1
Lotus japonicus
LjSGA_017927.1
I
0.773
orange1.1g008017m.g
Citrus sinensis
orange1.1g008017m.g
I
0.772
Ciclev10007837m.g
Citrus clementina
Ciclev10007837m.g
I
0.772
Thhalv10013267m.g
Eutrema salsugineum
Thhalv10013267m.g
I
0.769
Thhalv10028701m.g
Eutrema salsugineum
Thhalv10028701m.g
I
0.769
AMTR_s00007p00061550
Amborella trichopoda
AMTR_s00007p00061550
I
0.769
JKD
Arabidopsis thaliana
AT5G03150
D
0.769
gene09703-v1.0-hybrid
Fragaria vesca
gene09703-v1.0-hybrid
I
0.769
Bra018535
Brassica rapa
Bra018535
I
0.769
SapurV1A.5138s0010
Salix purpurea
SapurV1A.5138s0010
I
0.769
evm.TU.supercontig_52.117
Carica papaya
evm.TU.supercontig_52.117
I
0.769
GLYMA10G05880
Glycine max
GLYMA10G05880
I
0.769
Eucgr.A01159
Eucalyptus grandis
Eucgr.A01159
I
0.769
GLYMA13G20231
Glycine max
GLYMA13G20231
I
0.769
GLYMA10G03541
Glycine max
GLYMA10G03541
I
0.769
GLYMA03G31390
Glycine max
GLYMA03G31390
I
0.769
Gorai.006G167600
Gossypium raimondii
Gorai.006G167600
I
0.769
evm.TU.supercontig_45.59
Carica papaya
evm.TU.supercontig_45.59
I
0.769
JKD
Arabidopsis lyrata
fgenesh2_kg.6__219__AT5G03150.1
I
0.769
Gorai.009G418600
Gossypium raimondii
Gorai.009G418600
I
0.769
SapurV1A.0006s1510
Salix purpurea
SapurV1A.0006s1510
I
0.769
MDP0000480293
Malus domestica
MDP0000480293
I
0.769
SapurV1A.0112s0130
Salix purpurea
SapurV1A.0112s0130
I
0.769
Bo2g003880
Brassica oleracea
Bo2g003880
I
0.769
Bo2g100660
Brassica oleracea
Bo2g100660
I
0.769
MDP0000826293
Malus domestica
MDP0000826293
I
0.769
orange1.1g011807m.g
Citrus sinensis
orange1.1g011807m.g
I
0.769
MDP0000688613
Malus domestica
MDP0000688613
I
0.769
Ciclev10019959m.g
Citrus clementina
Ciclev10019959m.g
I
0.769
MDP0000243664
Malus domestica
MDP0000243664
I
0.769
Bra009549
Brassica rapa
Bra009549
I
0.769
orange1.1g011334m.g
Citrus sinensis
orange1.1g011334m.g
I
0.769
Gorai.008G002200
Gossypium raimondii
Gorai.008G002200
I
0.769
Bra005741
Brassica rapa
Bra005741
I
0.769
SapurV1A.0209s0070
Salix purpurea
SapurV1A.0209s0070
I
0.769
Bo9g183170
Brassica oleracea
Bo9g183170
I
0.769
MDP0000122321
Malus domestica
MDP0000122321
I
0.769
Gorai.007G139800
Gossypium raimondii
Gorai.007G139800
I
0.769
Aquca_049_00144
Aquilegia coerulea
Aquca_049_00144
I
0.769
AMTR_s00002p00270520
Amborella trichopoda
AMTR_s00002p00270520
I
0.769
PGSC0003DMG400010478
Solanum tuberosum
PGSC0003DMG400010478
I
0.769
JKD
Vitis vinifera
VIT_08s0040g02100
I
0.769
Ca_17124
Cicer arietinum
Ca_17124
I
0.769
Cla018558
Citrullus lanatus
Cla018558
I
0.769
Ciclev10011592m.g
Citrus clementina
Ciclev10011592m.g
I
0.769
PGSC0003DMG400001747
Solanum tuberosum
PGSC0003DMG400001747
I
0.769
Pm001002
Prunus mume
Pm001002
I
0.769
VIT_00s0179g00170
Vitis vinifera
VIT_00s0179g00170
I
0.769
chr1.CM0322.120.nc
Lotus japonicus
chr1.CM0322.120.nc
I
0.769
PRUPE_ppa004548mg
Prunus persica
PRUPE_ppa004548mg
I
0.769
Solyc10g084180.1
Solanum lycopersicum
Solyc10g084180.1
I
0.769
Solyc09g007550.2
Solanum lycopersicum
Solyc09g007550.2
I
0.769
TCM_004271
Theobroma cacao
TCM_004271
I
0.769
TCM_022127
Theobroma cacao
TCM_022127
I
0.769
POPTR_0002s04880
Populus trichocarpa
POPTR_0002s04880
I
0.769
POPTR_0006s13130
Populus trichocarpa
POPTR_0006s13130
I
0.769
POPTR_0016s08990
Populus trichocarpa
POPTR_0016s08990
I
0.769
30078.m002347
Ricinus communis
30078.m002347
I
0.769
29883.m001956
Ricinus communis
29883.m001956
I
0.769
cassava20187.m1
Manihot esculenta
cassava20187.m1
I
0.769
PK18288.1
Cannabis sativa
PK18288.1
I
0.769
Bostr.2128s0141
Boechera stricta
Bostr.2128s0141
I
0.769
GLYMA19G36430
Glycine max
GLYMA19G36430
I
0.769
Carubv10000736m.g
Capsella rubella
Carubv10000736m.g
I
0.769
Cagra.1597s0004
Capsella grandiflora
Cagra.1597s0004
I
0.769
mgf003691m
Mimulus guttatus
mgf003691m
I
0.769
Aquca_027_00051
Aquilegia coerulea
Aquca_027_00051
I
0.769
LjT03L03.50.nd
Lotus japonicus
LjT03L03.50.nd
I
0.769
cassava20362.m1
Manihot esculenta
cassava20362.m1
I
0.769
cassava26767.m1
Manihot esculenta
cassava26767.m1
I
0.769
cassava24590.valid.m1
Manihot esculenta
cassava24590.valid.m1
I
0.769
GLYMA19G34220
Glycine max
GLYMA19G34220
I
0.768
GLYMA19G42280
Glycine max
GLYMA19G42280
I
0.768
Solyc07g053570.2
Solanum lycopersicum
Solyc07g053570.2
I
0.764
GSMUA_Achr11G05700_001
Musa acuminata
GSMUA_Achr11G05700_001
I
0.764
GSMUA_Achr4G07200_001
Musa acuminata
GSMUA_Achr4G07200_001
I
0.764
Cucsa.181990
Cucumis sativus
Cucsa.181990
I
0.763
SapurV1A.2164s0010
Salix purpurea
SapurV1A.2164s0010
I
0.763
SapurV1A.1019s0030
Salix purpurea
SapurV1A.1019s0030
I
0.763
Sb01g021480
Sorghum bicolor
Sb01g021480
I
0.762
id1
Zea mays
GRMZM2G011357
D
0.762
Si036003m.g
Setaria italica
Si036003m.g
I
0.762
Ca_02459
Cicer arietinum
Ca_02459
I
0.759
MTR_2g090745
Medicago truncatula
MTR_2g090745
I
0.759
PGSC0003DMG400009382
Solanum tuberosum
PGSC0003DMG400009382
I
0.759
PGSC0003DMG400024700
Solanum tuberosum
PGSC0003DMG400024700
I
0.759
Solyc01g099340.2
Solanum lycopersicum
Solyc01g099340.2
I
0.759
Aquca_007_00164
Aquilegia coerulea
Aquca_007_00164
I
0.759
chr5.CM0299.500.nd
Lotus japonicus
chr5.CM0299.500.nd
I
0.758