Gorai.005G198100 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.005G198100 T143016_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.769 0.878
id1
M02672_2.00 		Zea mays
TBKYYBYTHBYG
CRVDARVRRMVA		 SELEX
Mathelier et al.(2014)
MA0120.1 		0.762 0.756
id1
M10380_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ID1_01 		0.762 0.756
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G198100.1 C2H2 ZF 154 175
Gorai.005G198100.1 C2H2 ZF 176 200

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

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178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action