Gorai.006G131700 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.006G131700 T143024_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.793 0.911
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.793 0.911
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G131700.1 C2H2 ZF 343 371
Gorai.006G131700.1 C2H2 ZF 370 401
Gorai.006G131700.2 C2H2 ZF 343 371
Gorai.006G131700.2 C2H2 ZF 370 401
Gorai.006G131700.3 C2H2 ZF 343 371
Gorai.006G131700.3 C2H2 ZF 370 401
Gorai.006G131700.4 C2H2 ZF 343 371
Gorai.006G131700.4 C2H2 ZF 370 401

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_036719 Theobroma cacao TCM_036719 I 0.803
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.803
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.793
mgf000060m Mimulus guttatus mgf000060m I 0.793
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.793
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.793
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.793
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.793
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.793
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.793
Pm022201 Prunus mume Pm022201 I 0.793
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.793
STOP1 Arabidopsis thaliana AT1G34370 D 0.793
PK23301.1 Cannabis sativa PK23301.1 I 0.793
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.793
Ca_04300 Cicer arietinum Ca_04300 I 0.793
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.793
MDP0000551046 Malus domestica MDP0000551046 I 0.793
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.793
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.793
MDP0000807856 Malus domestica MDP0000807856 I 0.793
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.793
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.793
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.793
Bo8g027000 Brassica oleracea Bo8g027000 I 0.793
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.793
MDP0000141403 Malus domestica MDP0000141403 I 0.793
MDP0000199559 Malus domestica MDP0000199559 I 0.793
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.793
Cla016623 Citrullus lanatus Cla016623 I 0.787
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.787
MDP0000453148 Malus domestica MDP0000453148 I 0.779
PGSC0003DMG400026081 Solanum tuberosum PGSC0003DMG400026081 I 0.774
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I 0.774
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.774
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.769
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.769
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.769
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.769
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.769
OBART01G38810 Oryza barthii OBART01G38810 I 0.769
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.769
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.769
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.769
Bra040971 Brassica rapa Bra040971 I 0.769
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.769
F775_04088 Aegilops tauschii F775_04088 I 0.769
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.769
OB01G47470 Oryza brachyantha OB01G47470 I 0.769
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.769
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.769
Si001053m.g Setaria italica Si001053m.g I 0.769
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.769
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.769
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.769
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.769
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.769
OS01G0871200 Oryza sativa OS01G0871200 I 0.769
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.764
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.764
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.764
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.764
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.764
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.764