Gorai.006G190500 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.006G190500 T143030_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SGR5
M06805_2.00
Arabidopsis thaliana
WTTTTGTCTTWTHYD

HRDAWAAGACAAAAW
Dap-seq
OMalley et al.(2016)
SGR5_col_a
0.806 0.909
SGR5
M06806_2.00
Arabidopsis thaliana
WTTTGTCTYWWHBNN

NNVDWWRAGACAAAW
Dap-seq
OMalley et al.(2016)
SGR5_colamp_a
0.806 0.909
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G190500.1 C2H2 ZF 133 154
Gorai.006G190500.1 C2H2 ZF 154 182

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

Invalid Input OrderBy

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action