Gorai.008G169500 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.008G169500 T143051_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.796 0.884
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.796 0.884
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G169500.1 C2H2 ZF 134 155
Gorai.008G169500.1 C2H2 ZF 155 181

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.808
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.808
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.808
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.808
Pm025274 Prunus mume Pm025274 I 0.808
Pm005926 Prunus mume Pm005926 I 0.808
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.808
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.808
Ca_05083 Cicer arietinum Ca_05083 I 0.808
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.808
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.808
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.808
PK25720.1 Cannabis sativa PK25720.1 I 0.808
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.808
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.808
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.808
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.808
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.803
Cla018945 Citrullus lanatus Cla018945 I 0.803
28952.m000016 Ricinus communis 28952.m000016 I 0.803
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.803
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.803
TCM_011210 Theobroma cacao TCM_011210 I 0.803
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.803
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.803
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.803
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.803
TCM_039880 Theobroma cacao TCM_039880 I 0.803
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.803
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.803
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.803
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.803
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.803
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.803
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.803
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.803
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.803
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.803
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.803
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.803
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.803
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.803
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.803
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.803
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.803
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.803
Bra024841 Brassica rapa Bra024841 I 0.803
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.803
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.803
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.803
Bo5g043540 Brassica oleracea Bo5g043540 I 0.802
Bra024771 Brassica rapa Bra024771 I 0.802
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.798
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.796
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.796
F775_43255 Aegilops tauschii F775_43255 I 0.796
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.796
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.796
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.796
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.796
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.796
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.796
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.796
Bra026624 Brassica rapa Bra026624 I 0.796
SGR5 Arabidopsis thaliana AT2G01940 D 0.796
Bo3g139880 Brassica oleracea Bo3g139880 I 0.796
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.796
Bo2g134790 Brassica oleracea Bo2g134790 I 0.796
Bo9g070370 Brassica oleracea Bo9g070370 I 0.796
Bra010981 Brassica rapa Bra010981 I 0.796
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.796
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.796
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.796
Bra017432 Brassica rapa Bra017432 I 0.796
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.796
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.796
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.796
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.796
Ca_22171 Cicer arietinum Ca_22171 I 0.796
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.796
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.796
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.796
OS03G0237250 Oryza sativa OS03G0237250 I 0.796
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.796
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.796
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.796
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.796
OB09G18760 Oryza brachyantha OB09G18760 I 0.796
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.796
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.796
mgf008235m Mimulus guttatus mgf008235m I 0.796
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.796
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.796
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.796
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.796
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.796
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.784
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.784
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.779
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.779
Cla005913 Citrullus lanatus Cla005913 I 0.778
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I 0.774
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.773
IDD14 Arabidopsis thaliana AT1G68130 I 0.773
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.773
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.773
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.773
Bo6g097320 Brassica oleracea Bo6g097320 I 0.773
Bra004050 Brassica rapa Bra004050 I 0.773
Bra004283 Brassica rapa Bra004283 I 0.773
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.773
Bo6g106560 Brassica oleracea Bo6g106560 I 0.773
PK17145.1 Cannabis sativa PK17145.1 I 0.767