CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.010G025200
(
Gossypium raimondii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Gorai.010G025200
T143070_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN
NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.812
0.891
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH
DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.799
0.717
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.799
0.696
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.794
0.891
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.787
0.826
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT
AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.787
0.826
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.787
0.826
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN
NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.777
0.783
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.777
0.783
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN
NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.776
0.696
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.760
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.010G025200.1
C2H2 ZF
84
106
YKCSVCNKAFNSYQALGGHKASH
Gorai.010G025200.1
C2H2 ZF
136
158
HECSICHKSFPTGQALGGHKRRH
Links
Other
C2H2 ZF
family TFs
Other
Gossypium raimondii
TFs
294 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy