Lus10004840.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10004840.g T143096_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.758 0.930
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.758 0.930
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.758 0.884
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.758 0.884
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10004840 C2H2 ZF 142 163
Lus10004840 C2H2 ZF 162 188

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.341140 Cucumis sativus Cucsa.341140 I 0.758
estExt_fgenesh1_pg.C_630029 Physcomitrella patens estExt_fgenesh1_pg.C_630029 I 0.758
gw1.43.55.1 Physcomitrella patens gw1.43.55.1 I 0.758
mgf016024m Mimulus guttatus mgf016024m I 0.758
Cucsa.277240 Cucumis sativus Cucsa.277240 I 0.758
cassava46554.m1 Manihot esculenta cassava46554.m1 I 0.758
cassava25285.m1 Manihot esculenta cassava25285.m1 I 0.758
cassava31535.valid.m1 Manihot esculenta cassava31535.valid.m1 I 0.758
cassava32771.m1 Manihot esculenta cassava32771.m1 I 0.758
mgf020392m Mimulus guttatus mgf020392m I 0.758
Aquca_002_01389 Aquilegia coerulea Aquca_002_01389 I 0.758
Cagra.3501s0038 Capsella grandiflora Cagra.3501s0038 I 0.758
Carubv10009023m.g Capsella rubella Carubv10009023m.g I 0.758
Carubv10016861m.g Capsella rubella Carubv10016861m.g I 0.758
Cagra.0549s0002 Capsella grandiflora Cagra.0549s0002 I 0.758
Bostr.24340s0006 Boechera stricta Bostr.24340s0006 I 0.758
Aquca_003_00800 Aquilegia coerulea Aquca_003_00800 I 0.758
Aquca_017_00227 Aquilegia coerulea Aquca_017_00227 I 0.758
Bostr.0556s0033 Boechera stricta Bostr.0556s0033 I 0.758
cassava184.valid.m1 Manihot esculenta cassava184.valid.m1 I 0.758
30128.m008805 Ricinus communis 30128.m008805 I 0.758
TRAES3BF064300010CFD_g Triticum aestivum TRAES3BF064300010CFD_g I 0.758
Traes_4AS_501676A91 Triticum aestivum Traes_4AS_501676A91 I 0.758
Traes_5BL_096B0BDA8 Triticum aestivum Traes_5BL_096B0BDA8 I 0.758
VIT_01s0010g02090 Vitis vinifera VIT_01s0010g02090 I 0.758
TCM_026632 Theobroma cacao TCM_026632 I 0.758
TCM_004569 Theobroma cacao TCM_004569 I 0.758
Si029540m.g Setaria italica Si029540m.g I 0.758
Si035083m.g Setaria italica Si035083m.g I 0.758
Solyc09g074780.2 Solanum lycopersicum Solyc09g074780.2 I 0.758
VIT_07s0104g01620 Vitis vinifera VIT_07s0104g01620 I 0.758
VIT_09s0002g02300 Vitis vinifera VIT_09s0002g02300 I 0.758
Pm013340 Prunus mume Pm013340 I 0.758
Pm014215 Prunus mume Pm014215 I 0.758
28694.m000662 Ricinus communis 28694.m000662 I 0.758
Pm003292 Prunus mume Pm003292 I 0.758
Cla017193 Citrullus lanatus Cla017193 I 0.758
VIT_14s0060g02440 Vitis vinifera VIT_14s0060g02440 I 0.758
Ca_00943 Cicer arietinum Ca_00943 I 0.758
Ca_05430 Cicer arietinum Ca_05430 I 0.758
Ciclev10000982m.g Citrus clementina Ciclev10000982m.g I 0.758
Ciclev10023420m.g Citrus clementina Ciclev10023420m.g I 0.758
Pavir.Eb00068 Panicum virgatum Pavir.Eb00068 I 0.758
Pavir.Fa00016 Panicum virgatum Pavir.Fa00016 I 0.758
Pavir.Fb02381 Panicum virgatum Pavir.Fb02381 I 0.758
Pavir.Ia04118 Panicum virgatum Pavir.Ia04118 I 0.758
Pavir.Ea00021 Panicum virgatum Pavir.Ea00021 I 0.758
Pavir.Bb02566 Panicum virgatum Pavir.Bb02566 I 0.758
orange1.1g007898m.g Citrus sinensis orange1.1g007898m.g I 0.758
orange1.1g010444m.g Citrus sinensis orange1.1g010444m.g I 0.758
Pavir.Ba01478 Panicum virgatum Pavir.Ba01478 I 0.758
Pavir.Ib00651 Panicum virgatum Pavir.Ib00651 I 0.758
SapurV1A.0066s0390 Salix purpurea SapurV1A.0066s0390 I 0.758
chr5.LjT02I10.320.nd Lotus japonicus chr5.LjT02I10.320.nd I 0.758
LjSGA_010242.1 Lotus japonicus LjSGA_010242.1 I 0.758
LjT42M11.200.nc Lotus japonicus LjT42M11.200.nc I 0.758
PK10087.1 Cannabis sativa PK10087.1 I 0.758
PK00778.1 Cannabis sativa PK00778.1 I 0.758
SapurV1A.0424s0240 Salix purpurea SapurV1A.0424s0240 I 0.758
Thhalv10004022m.g Eutrema salsugineum Thhalv10004022m.g I 0.758
Thhalv10011450m.g Eutrema salsugineum Thhalv10011450m.g I 0.758
MDP0000441454 Malus domestica MDP0000441454 I 0.758
MDP0000161241 Malus domestica MDP0000161241 I 0.758
gene23037-v1.0-hybrid Fragaria vesca gene23037-v1.0-hybrid I 0.758
gene24910-v1.0-hybrid Fragaria vesca gene24910-v1.0-hybrid I 0.758
Gorai.004G088400 Gossypium raimondii Gorai.004G088400 I 0.758
Gorai.007G130100 Gossypium raimondii Gorai.007G130100 I 0.758
gene22505-v1.0-hybrid Fragaria vesca gene22505-v1.0-hybrid I 0.758
evm.TU.supercontig_9.191 Carica papaya evm.TU.supercontig_9.191 I 0.758
Ciclev10025122m.g Citrus clementina Ciclev10025122m.g I 0.758
Eucgr.H01190 Eucalyptus grandis Eucgr.H01190 I 0.758
evm.TU.supercontig_25.46 Carica papaya evm.TU.supercontig_25.46 I 0.758
Gorai.007G298600 Gossypium raimondii Gorai.007G298600 I 0.758
Gorai.008G009800 Gossypium raimondii Gorai.008G009800 I 0.758
Lus10036573.g Linum usitatissimum Lus10036573.g I 0.758
Lus10041356.g Linum usitatissimum Lus10041356.g I 0.758
MDP0000150618 Malus domestica MDP0000150618 I 0.758
Lus10035092.g Linum usitatissimum Lus10035092.g I 0.758
Lus10031928.g Linum usitatissimum Lus10031928.g I 0.758
Gorai.008G155300 Gossypium raimondii Gorai.008G155300 I 0.758
Gorai.011G064700 Gossypium raimondii Gorai.011G064700 I 0.758
Lus10008396.g Linum usitatissimum Lus10008396.g I 0.758
Si013546m.g Setaria italica Si013546m.g I 0.758
Si005031m.g Setaria italica Si005031m.g I 0.758
GRMZM2G042666 Zea mays GRMZM2G042666 I 0.758
GRMZM2G151309 Zea mays GRMZM2G151309 I 0.758
GRMZM2G171073 Zea mays GRMZM2G171073 I 0.758
GRMZM2G179677 Zea mays GRMZM2G179677 I 0.758
GLYMA20G24366 Glycine max GLYMA20G24366 I 0.758
GLYMA20G00850 Glycine max GLYMA20G00850 I 0.758
GLYMA13G42550 Glycine max GLYMA13G42550 I 0.758
GLYMA15G02840 Glycine max GLYMA15G02840 I 0.758
GLYMA19G39640 Glycine max GLYMA19G39640 I 0.758
GRMZM5G828179 Zea mays GRMZM5G828179 I 0.758
GSMUA_Achr1G17940_001 Musa acuminata GSMUA_Achr1G17940_001 I 0.758
GSMUA_AchrUn_randomG02370_001 Musa acuminata GSMUA_AchrUn_randomG02370_001 I 0.758
LPERR01G08450 Leersia perrieri LPERR01G08450 I 0.758
LPERR03G06460 Leersia perrieri LPERR03G06460 I 0.758
GSMUA_Achr9G23870_001 Musa acuminata GSMUA_Achr9G23870_001 I 0.758
GSMUA_Achr9G06650_001 Musa acuminata GSMUA_Achr9G06650_001 I 0.758
GSMUA_Achr4G05240_001 Musa acuminata GSMUA_Achr4G05240_001 I 0.758
GSMUA_Achr4G11810_001 Musa acuminata GSMUA_Achr4G11810_001 I 0.758
GSMUA_Achr7G14780_001 Musa acuminata GSMUA_Achr7G14780_001 I 0.758
GLYMA10G42660 Glycine max GLYMA10G42660 I 0.758
GLYMA08G20520 Glycine max GLYMA08G20520 I 0.758
Bo3g184730 Brassica oleracea Bo3g184730 I 0.758
Bo7g080200 Brassica oleracea Bo7g080200 I 0.758
Bo9g071570 Brassica oleracea Bo9g071570 I 0.758
Bra024833 Brassica rapa Bra024833 I 0.758
BGIOSGA026514 Oryza indica BGIOSGA026514 I 0.758
BGIOSGA012049 Oryza indica BGIOSGA012049 I 0.758
AT1G14580 Arabidopsis thaliana AT1G14580 D 0.758
IDD5 Arabidopsis thaliana AT2G02070 D 0.758
BGIOSGA003122 Oryza indica BGIOSGA003122 I 0.758
Bra030886 Brassica rapa Bra030886 I 0.758
BRADI1G71330 Brachypodium distachyon BRADI1G71330 I 0.758
GLYMA07G01130 Glycine max GLYMA07G01130 I 0.758
GLYMA07G19470 Glycine max GLYMA07G19470 I 0.758
GLYMA07G19540 Glycine max GLYMA07G19540 I 0.758
GLYMA03G36990 Glycine max GLYMA03G36990 I 0.758
GLYMA02G17293 Glycine max GLYMA02G17293 I 0.758
BRADI2G08460 Brachypodium distachyon BRADI2G08460 I 0.758
BRADI4G37540 Brachypodium distachyon BRADI4G37540 I 0.758
F775_17205 Aegilops tauschii F775_17205 I 0.758
AMTR_s00057p00204520 Amborella trichopoda AMTR_s00057p00204520 I 0.758
LPERR08G19920 Leersia perrieri LPERR08G19920 I 0.758
OS03G0197800 Oryza sativa OS03G0197800 I 0.758
OS08G0554400 Oryza sativa OS08G0554400 I 0.758
PGSC0003DMG400011365 Solanum tuberosum PGSC0003DMG400011365 I 0.758
POPTR_0002s20950 Populus trichocarpa POPTR_0002s20950 I 0.758
OS01G0242200 Oryza sativa OS01G0242200 I 0.758
ORUFI08G25660 Oryza rufipogon ORUFI08G25660 I 0.758
ORGLA08G0212300 Oryza glaberrima ORGLA08G0212300 I 0.758
ORUFI01G09770 Oryza rufipogon ORUFI01G09770 I 0.758
ORUFI03G07010 Oryza rufipogon ORUFI03G07010 I 0.758
POPTR_0005s02730 Populus trichocarpa POPTR_0005s02730 I 0.758
POPTR_0013s01990 Populus trichocarpa POPTR_0013s01990 I 0.758
Sb02g032400 Sorghum bicolor Sb02g032400 I 0.758
Sb07g024550 Sorghum bicolor Sb07g024550 I 0.758
AtIDD5 Arabidopsis lyrata scaffold_500135.1 I 0.758
Sb01g043960 Sorghum bicolor Sb01g043960 I 0.758
PRUPE_ppa023775mg Prunus persica PRUPE_ppa023775mg I 0.758
PRUPE_ppa004346m2g Prunus persica PRUPE_ppa004346m2g I 0.758
PRUPE_ppa018226mg Prunus persica PRUPE_ppa018226mg I 0.758
PRUPE_ppa023209mg Prunus persica PRUPE_ppa023209mg I 0.758
ORGLA03G0068800 Oryza glaberrima ORGLA03G0068800 I 0.758
ORGLA01G0080600 Oryza glaberrima ORGLA01G0080600 I 0.758
OBART01G08960 Oryza barthii OBART01G08960 I 0.758
OBART03G07050 Oryza barthii OBART03G07050 I 0.758
OBART08G23150 Oryza barthii OBART08G23150 I 0.758
OB08G30010 Oryza brachyantha OB08G30010 I 0.758
OB03G17340 Oryza brachyantha OB03G17340 I 0.758
MLOC_78652 Hordeum vulgare MLOC_78652 I 0.758
MTR_1g112270 Medicago truncatula MTR_1g112270 I 0.758
MTR_2g099990 Medicago truncatula MTR_2g099990 I 0.758
OGLUM01G10280 Oryza glumaepatula OGLUM01G10280 I 0.758
OGLUM03G07180 Oryza glumaepatula OGLUM03G07180 I 0.758
ONIVA01G11570 Oryza nivara ONIVA01G11570 I 0.758
ONIVA08G26190 Oryza nivara ONIVA08G26190 I 0.758
OPUNC01G08840 Oryza punctata OPUNC01G08840 I 0.758
OPUNC08G21240 Oryza punctata OPUNC08G21240 I 0.758
OMERI08G18050 Oryza meridionalis OMERI08G18050 I 0.758
OMERI03G06930 Oryza meridionalis OMERI03G06930 I 0.758
OGLUM08G24590 Oryza glumaepatula OGLUM08G24590 I 0.758
OMERI01G09010 Oryza meridionalis OMERI01G09010 I 0.758
MLOC_58346 Hordeum vulgare MLOC_58346 I 0.758
GSMUA_Achr10G15170_001 Musa acuminata GSMUA_Achr10G15170_001 I 0.757