CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10004840.g
(
Linum usitatissimum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Lus10004840.g
T143096_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IDD5
M06807_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
IDD5_colamp_a
0.758
0.930
IDD5
M06808_2.00
Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW
Dap-seq
OMalley et al.(2016)
IDD5_col
0.758
0.930
AT1G14580
M06797_2.00
Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN
Dap-seq
OMalley et al.(2016)
At1g14580_col_a
0.758
0.884
AT1G14580
M06798_2.00
Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN
Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a
0.758
0.884
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10004840
C2H2 ZF
142
163
WKCDKCSKKYAVQSDWKAHSKT
Lus10004840
C2H2 ZF
162
188
KTCGTREYRCDCGTLFSRRDSFIRHTA
Links
Other
C2H2 ZF
family TFs
Other
Linum usitatissimum
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy