Lus10004887.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10004887.g T143097_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10004887 C2H2 ZF 294 315
Lus10004887 C2H2 ZF 314 340

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.827
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.821
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.821
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.821
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.821
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.809
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.809
WIP3 Arabidopsis thaliana AT1G08290 N 0.809
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.809
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.809
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.803
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.803
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.803
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.803
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.803
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.803
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.803
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.803
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.803
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.803
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.803
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.803
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.803
MDP0000131949 Malus domestica MDP0000131949 N 0.803
Pm001374 Prunus mume Pm001374 N 0.803
Ca_07051 Cicer arietinum Ca_07051 N 0.803
MDP0000300013 Malus domestica MDP0000300013 N 0.803
30055.m001542 Ricinus communis 30055.m001542 N 0.803
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.803
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.803
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.803
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.803
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.803
TCM_041441 Theobroma cacao TCM_041441 N 0.803
Bo5g008880 Brassica oleracea Bo5g008880 N 0.799
Bra018638 Brassica rapa Bra018638 N 0.799
Bo8g112550 Brassica oleracea Bo8g112550 N 0.799
Bra031621 Brassica rapa Bra031621 N 0.799
Ca_16482 Cicer arietinum Ca_16482 N 0.798
mgf022981m Mimulus guttatus mgf022981m N 0.798
PK05257.1 Cannabis sativa PK05257.1 N 0.797
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.797
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.797
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.797
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.788
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.788
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.788
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.788
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.788
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.788
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.788
OBART08G19670 Oryza barthii OBART08G19670 N 0.788
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.788
Si013819m.g Setaria italica Si013819m.g N 0.788
OS09G0485600 Oryza sativa OS09G0485600 N 0.788
OS08G0504000 Oryza sativa OS08G0504000 N 0.788
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.788
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.788
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.788
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.788
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.788
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.788
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.788
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.788
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.788
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.788
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.788
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.788
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.788
OB08G26650 Oryza brachyantha OB08G26650 N 0.788
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.787
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.787
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.787
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.787
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.787
Cla000184 Citrullus lanatus Cla000184 N 0.784
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.784
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.784
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.782
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.782
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.782
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.782
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.782
Si029897m.g Setaria italica Si029897m.g N 0.782
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.782
F775_14972 Aegilops tauschii F775_14972 N 0.782
Cla002714 Citrullus lanatus Cla002714 N 0.782
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.782
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.782
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.782
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.782
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.782
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.782
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.782
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.782
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.782
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.782
TCM_005892 Theobroma cacao TCM_005892 N 0.778
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.778
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.778
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.778
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.778
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.778
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.778
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.778
mgf022319m Mimulus guttatus mgf022319m N 0.778
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.778
Cla015481 Citrullus lanatus Cla015481 N 0.778
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.778
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.778
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.778
30061.m000294 Ricinus communis 30061.m000294 N 0.778
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.778
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.778
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.774
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.774
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.774
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.774
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.774
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.774
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.774
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.773
Bo5g081360 Brassica oleracea Bo5g081360 N 0.772
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.771
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.771
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.771
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.771
OBART01G37960 Oryza barthii OBART01G37960 N 0.771
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.771
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.771
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.771
OB05G26090 Oryza brachyantha OB05G26090 N 0.771
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.771
OS01G0859100 Oryza sativa OS01G0859100 N 0.771
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.771
Pavir.J11927 Panicum virgatum Pavir.J11927 N 0.771
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.771
F775_11193 Aegilops tauschii F775_11193 N 0.771
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.771
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.771
Si022296m.g Setaria italica Si022296m.g N 0.771
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.771
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.771
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.768
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.767
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.767
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.767
MDP0000144266 Malus domestica MDP0000144266 N 0.766
MDP0000142494 Malus domestica MDP0000142494 N 0.765
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.764
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.764
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.764
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.764
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.764
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.764
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.764
TCM_034881 Theobroma cacao TCM_034881 N 0.764
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.764
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.764
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.764
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.764
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.764
TCM_040610 Theobroma cacao TCM_040610 N 0.764
29908.m006047 Ricinus communis 29908.m006047 N 0.764
30169.m006417 Ricinus communis 30169.m006417 N 0.764
TT1 Vitis vinifera VIT_18s0001g05860 N 0.764
Ca_27078 Cicer arietinum Ca_27078 N 0.764
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.764
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.762
MDP0000573922 Malus domestica MDP0000573922 N 0.762
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.762
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.761
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.761
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.761
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.761
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.761
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.761
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.761
Si030360m.g Setaria italica Si030360m.g N 0.761
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.761
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.761
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.761
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.761
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.761
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.761
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.761
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.761
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.761
OS09G0307400 Oryza sativa OS09G0307400 N 0.761
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.759
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.758
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.758
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.758
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.758
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.758
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.758
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.758
MDP0000303483 Malus domestica MDP0000303483 N 0.758
MDP0000899280 Malus domestica MDP0000899280 N 0.758
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.758
TCM_011858 Theobroma cacao TCM_011858 N 0.758
OBART06G20890 Oryza barthii OBART06G20890 N 0.758
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.758
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.758
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.758
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.758
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.758
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.758
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.758
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.758
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.758
Bra019822 Brassica rapa Bra019822 N 0.758
Bo5g015200 Brassica oleracea Bo5g015200 N 0.758
WIP6 Arabidopsis thaliana AT1G13290 N 0.758
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.758
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.758
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.758
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.758
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.758
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.758
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.758
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.758
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.758
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.758
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.758
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.758
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.758
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.758
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.758
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.758
Pm029018 Prunus mume Pm029018 N 0.758
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.758
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.758
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.758
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.758
Ca_08435 Cicer arietinum Ca_08435 N 0.758
Ca_24699 Cicer arietinum Ca_24699 N 0.758
Ca_21713 Cicer arietinum Ca_21713 N 0.758
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.758