Lus10009278.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10009278.g T143105_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.816 0.891
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.816 0.870
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.793 0.739
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.791 0.848
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.770 0.696
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.770 0.696
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.770 0.696
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.769 0.674
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.760 0.674
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.760 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009278 C2H2 ZF 155 177
Lus10009278 C2H2 ZF 200 222

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.822
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.821
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.816
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.816
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.816
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.816
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.816
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.816
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.816
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.816
ZAT4 Arabidopsis thaliana AT2G45120 D 0.816
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.816
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.816
ZAT9 Arabidopsis thaliana AT3G60580 D 0.816
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.816
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.816
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.815
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.806
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.806
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.806
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.806
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.806
Ca_23672 Cicer arietinum Ca_23672 I 0.806
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.806
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.806
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.806
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.798
30174.m008818 Ricinus communis 30174.m008818 I 0.798
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.797
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.794
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.794
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.794
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.794
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.794
mgf006006m Mimulus guttatus mgf006006m I 0.794
30170.m013751 Ricinus communis 30170.m013751 I 0.794
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.794
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.793
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.793
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.793
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.793
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.793
Ca_01586 Cicer arietinum Ca_01586 I 0.793
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.793
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.793
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.793
28152.m000908 Ricinus communis 28152.m000908 I 0.793
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.793
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.793
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.793
Pm021284 Prunus mume Pm021284 I 0.793
TCM_034720 Theobroma cacao TCM_034720 I 0.793
Pm005390 Prunus mume Pm005390 I 0.793
TCM_007214 Theobroma cacao TCM_007214 I 0.793
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.793
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.793
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.793
MDP0000573176 Malus domestica MDP0000573176 I 0.793
MDP0000762756 Malus domestica MDP0000762756 I 0.793
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.793
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.793
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.793
MDP0000198015 Malus domestica MDP0000198015 I 0.793
MDP0000319225 Malus domestica MDP0000319225 I 0.793
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.793
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.793
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.793
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.793
AZF2 Arabidopsis thaliana AT3G19580 D 0.793
Bra022436 Brassica rapa Bra022436 I 0.793
Bra038219 Brassica rapa Bra038219 I 0.793
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.793
PK10188.1 Cannabis sativa PK10188.1 I 0.793
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.793
Bo1g113530 Brassica oleracea Bo1g113530 I 0.793
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.793
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.793
Bo5g113850 Brassica oleracea Bo5g113850 I 0.793
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.793
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.793
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.793
Ca_18364 Cicer arietinum Ca_18364 I 0.793
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.793
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.793
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.793
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.793
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.793
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.793
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.793
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.793
Bo8g095300 Brassica oleracea Bo8g095300 I 0.792
Bo6g077190 Brassica oleracea Bo6g077190 I 0.792
Bo4g104940 Brassica oleracea Bo4g104940 I 0.792
Bo3g037560 Brassica oleracea Bo3g037560 I 0.792
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.792
Si010615m.g Setaria italica Si010615m.g I 0.792
OBART04G21020 Oryza barthii OBART04G21020 I 0.792
Bo4g195370 Brassica oleracea Bo4g195370 I 0.792
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.792
Bra003422 Brassica rapa Bra003422 I 0.792
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.792
OS04G0552700 Oryza sativa OS04G0552700 I 0.792
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.792
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.792
Bra040325 Brassica rapa Bra040325 I 0.792
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.792
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.792
Bra014483 Brassica rapa Bra014483 I 0.792
Bra000372 Brassica rapa Bra000372 I 0.792
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.792
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.792
Bra007545 Brassica rapa Bra007545 I 0.792
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.791
ZAT1 Arabidopsis thaliana AT1G02030 D 0.791
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.791
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.791
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.791
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.791
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.791
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.791
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.788
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.786
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.786
OB04G28040 Oryza brachyantha OB04G28040 I 0.786
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.786
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.786
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.783
ORUFI02G28150 Oryza rufipogon ORUFI02G28150 I 0.782
OMERI02G26030 Oryza meridionalis OMERI02G26030 I 0.782
ONIVA02G29150 Oryza nivara ONIVA02G29150 I 0.782
OGLUM02G27190 Oryza glumaepatula OGLUM02G27190 I 0.782
OBART02G26700 Oryza barthii OBART02G26700 I 0.782
GSMUA_Achr5G15450_001 Musa acuminata GSMUA_Achr5G15450_001 I 0.782
ORGLA02G0229600 Oryza glaberrima ORGLA02G0229600 I 0.782
OS02G0659500 Oryza sativa OS02G0659500 I 0.782
TRIUR3_29692 Triticum urartu TRIUR3_29692 I 0.782
BGIOSGA008755 Oryza indica BGIOSGA008755 I 0.782
mgf021094m Mimulus guttatus mgf021094m I 0.781
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.778
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.778
mgf017082m Mimulus guttatus mgf017082m I 0.776
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.775
TCM_014903 Theobroma cacao TCM_014903 I 0.775
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.774
Bra033666 Brassica rapa Bra033666 I 0.774
Bo7g065200 Brassica oleracea Bo7g065200 I 0.774
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.774
AZF3 Arabidopsis thaliana AT5G43170 I 0.774
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.773
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.772
30147.m014242 Ricinus communis 30147.m014242 I 0.772
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.772
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.771
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.771
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.771
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.770
Bo7g048650 Brassica oleracea Bo7g048650 I 0.770
TCM_000780 Theobroma cacao TCM_000780 I 0.770
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.770
Bo3g142840 Brassica oleracea Bo3g142840 I 0.770
ZAT10 Arabidopsis thaliana AT1G27730 D 0.770
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.770
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.770
29661.m000908 Ricinus communis 29661.m000908 I 0.770
Bra010922 Brassica rapa Bra010922 I 0.770
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.769
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.769
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.769
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.769
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.769
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.769
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.769
MLOC_54674 Hordeum vulgare MLOC_54674 I 0.769
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.769
OS12G0583700 Oryza sativa OS12G0583700 I 0.769
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.769
Si023013m.g Setaria italica Si023013m.g I 0.769
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.769
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.769
Bo9g181170 Brassica oleracea Bo9g181170 I 0.769
ZAT6 Arabidopsis thaliana AT5G04340 D 0.769
Bra009464 Brassica rapa Bra009464 I 0.769
Bra018817 Brassica rapa Bra018817 I 0.769
BRADI1G14750 Brachypodium distachyon BRADI1G14750 I 0.769
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.769
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.769
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.769
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.769
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.769
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.769
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.769
Ca_05641 Cicer arietinum Ca_05641 I 0.769
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.768
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.768
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.768
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.768
PGSC0003DMG400045547 Solanum tuberosum PGSC0003DMG400045547 I 0.763
Gorai.001G049300 Gossypium raimondii Gorai.001G049300 I 0.761
Cla001400 Citrullus lanatus Cla001400 I 0.761
Bra012914 Brassica rapa Bra012914 I 0.760
AZF1 Arabidopsis thaliana AT5G67450 D 0.760
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.760
Bo1g081350 Brassica oleracea Bo1g081350 I 0.760
Bo2g168030 Brassica oleracea Bo2g168030 I 0.760
Bra029985 Brassica rapa Bra029985 I 0.760
Bra031834 Brassica rapa Bra031834 I 0.760
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.760
mgf021789m Mimulus guttatus mgf021789m I 0.760
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.760
Bra037845 Brassica rapa Bra037845 I 0.760
Bo9g019120 Brassica oleracea Bo9g019120 I 0.760
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.759
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.759
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.759
OB03G42170 Oryza brachyantha OB03G42170 I 0.759
Cla022966 Citrullus lanatus Cla022966 I 0.759