Lus10022204.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10022204.g T143122_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN

NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.757 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10022204 C2H2 ZF 32 54

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.827
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.827
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.827
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.827
Si032478m.g Setaria italica Si032478m.g I 0.827
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.827
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.827
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.827
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.827
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.827
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.827
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.827
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.827
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.827
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N 0.817
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N 0.817
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N 0.817
ONIVA07G09630 Oryza nivara ONIVA07G09630 N 0.817
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N 0.817
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N 0.817
MDP0000143134 Malus domestica MDP0000143134 N 0.817
OLONG_012182 Oryza longistaminata OLONG_012182 N 0.817
OS07G0417400 Oryza sativa OS07G0417400 N 0.817
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N 0.817
OPUNC07G10480 Oryza punctata OPUNC07G10480 N 0.817
PRUPE_ppa016491mg Prunus persica PRUPE_ppa016491mg N 0.817
Cla008348 Citrullus lanatus Cla008348 N 0.817
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N 0.817
Cla021877 Citrullus lanatus Cla021877 N 0.817
Pm009419 Prunus mume Pm009419 N 0.817
Cucsa.117650 Cucumis sativus Cucsa.117650 N 0.817
cassava32634.m1 Manihot esculenta cassava32634.m1 N 0.817
Cagra.19122s0001 Capsella grandiflora Cagra.19122s0001 N 0.817
TCM_020819 Theobroma cacao TCM_020819 N 0.817
Ciclev10006751m.g Citrus clementina Ciclev10006751m.g N 0.817
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N 0.817
OBART07G11660 Oryza barthii OBART07G11660 N 0.817
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N 0.817
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N 0.817
Carubv10028256m.g Capsella rubella Carubv10028256m.g N 0.817
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N 0.817
ONIVA07G09640 Oryza nivara ONIVA07G09640 N 0.817
GLYMA12G06340 Glycine max GLYMA12G06340 N 0.817
GLYMA20G34840 Glycine max GLYMA20G34840 N 0.817
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N 0.817
GLYMA10G32810 Glycine max GLYMA10G32810 N 0.817
Bra033683 Brassica rapa Bra033683 N 0.817
BGIOSGA025569 Oryza indica BGIOSGA025569 N 0.817
Bo7g065530 Brassica oleracea Bo7g065530 N 0.817
Bo9g059250 Brassica oleracea Bo9g059250 N 0.817
LPERR07G09750 Leersia perrieri LPERR07G09750 N 0.817
Bra027500 Brassica rapa Bra027500 N 0.817
MTR_1g075430 Medicago truncatula MTR_1g075430 N 0.817
OB07G18110 Oryza brachyantha OB07G18110 N 0.817
MTR_4g064873 Medicago truncatula MTR_4g064873 N 0.817
Cla006093 Citrullus lanatus Cla006093 N 0.814
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N 0.814
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N 0.814
MTR_1g070250 Medicago truncatula MTR_1g070250 N 0.814
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N 0.814
Cucsa.016990 Cucumis sativus Cucsa.016990 N 0.814
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N 0.814
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N 0.814
PK22236.1 Cannabis sativa PK22236.1 N 0.814
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N 0.814
F775_00917 Aegilops tauschii F775_00917 I 0.808
GSMUA_Achr11G02150_001 Musa acuminata GSMUA_Achr11G02150_001 N 0.798
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.779
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.779
mgf024356m Mimulus guttatus mgf024356m I 0.779
28345.m000111 Ricinus communis 28345.m000111 N 0.777
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.777
TCM_021876 Theobroma cacao TCM_021876 N 0.777
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.777
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N 0.777
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I 0.769
Pm002649 Prunus mume Pm002649 N 0.769
MTR_7g063220 Medicago truncatula MTR_7g063220 I 0.769
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N 0.769
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.757
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.757
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.757
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.757
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.757
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.757
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.757
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.757
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.757
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.757
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.757
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.757
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.757
MDP0000225209 Malus domestica MDP0000225209 I 0.757
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.757
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.757
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.757
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.757
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.757
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.757
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.757
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.757
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.757
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.757
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.757
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.757
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.757
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.757
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.757
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.757
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.757
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.757
OB05G18710 Oryza brachyantha OB05G18710 I 0.757
OBART05G10090 Oryza barthii OBART05G10090 I 0.757
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.757
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.757
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.757
OBART11G23770 Oryza barthii OBART11G23770 I 0.757
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.757
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.757
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.757
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.757
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.757
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.757
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.757
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.757
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.757
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.757
RBE Arabidopsis thaliana AT5G06070 D 0.757
SUP Arabidopsis thaliana AT3G23130 I 0.757
ZFP11 Arabidopsis thaliana AT2G42410 I 0.757
Bo1g102390 Brassica oleracea Bo1g102390 I 0.757
Bo3g003640 Brassica oleracea Bo3g003640 I 0.757
Bra023759 Brassica rapa Bra023759 I 0.757
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.757
Bra009160 Brassica rapa Bra009160 I 0.757
Bra005874 Brassica rapa Bra005874 I 0.757
Bo9g176590 Brassica oleracea Bo9g176590 I 0.757
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.757
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.757
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.757
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.757
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.757
TCM_021875 Theobroma cacao TCM_021875 I 0.757
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.757
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.757
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.757
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.757
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.757
29603.m000536 Ricinus communis 29603.m000536 I 0.757
Pm009420 Prunus mume Pm009420 I 0.757
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.757
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.757
Si024070m.g Setaria italica Si024070m.g I 0.757
OS05G0286100 Oryza sativa OS05G0286100 I 0.757
OS11G0707300 Oryza sativa OS11G0707300 I 0.757
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.757
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.757
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.757
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.757
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.757
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.757
Si019050m.g Setaria italica Si019050m.g I 0.757
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.757
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.757
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.757
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.757