Lus10024875.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10024875.g T143129_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RBE
M01858_2.00
Arabidopsis thaliana
NNNASWN

NWSTNNN
PBM
Weirauch et al.(2014)
pTH7538
0.767 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10024875 C2H2 ZF 22 44

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10000705.g Linum usitatissimum Lus10000705.g I 0.827
Bo1g017920 Brassica oleracea Bo1g017920 I 0.777
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.777
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.777
Bra013257 Brassica rapa Bra013257 I 0.777
Cla021878 Citrullus lanatus Cla021878 I 0.777
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.777
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.777
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.777
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.777
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.777
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I 0.774
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I 0.774
Ca_12901 Cicer arietinum Ca_12901 I 0.769
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.769
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.769
mg013419m Mimulus guttatus mg013419m I 0.769
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.767
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.767
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.767
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.767
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.767
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.767
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.767
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.767
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.767
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.767
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.767
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.767
Cla008944 Citrullus lanatus Cla008944 I 0.767
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.767
29603.m000536 Ricinus communis 29603.m000536 I 0.767
Pm009420 Prunus mume Pm009420 I 0.767
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.767
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.767
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.767
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.767
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.767
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.767
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.767
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.767
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.767
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.767
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.767
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.767
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.767
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.767
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.767
MDP0000225209 Malus domestica MDP0000225209 I 0.767
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.767
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.767
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.767
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.767
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.767
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.767
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.767
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.767
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.767
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.767
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.767
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.767
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.767
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.767
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.767
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.767
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.767
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.767
OB02G10110 Oryza brachyantha OB02G10110 I 0.767
OB05G18710 Oryza brachyantha OB05G18710 I 0.767
TCM_021875 Theobroma cacao TCM_021875 I 0.767
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.767
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.767
OBART11G23770 Oryza barthii OBART11G23770 I 0.767
OBART05G10090 Oryza barthii OBART05G10090 I 0.767
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.767
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.767
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.767
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.767
RBE Arabidopsis thaliana AT5G06070 D 0.767
SUP Arabidopsis thaliana AT3G23130 I 0.767
ZFP11 Arabidopsis thaliana AT2G42410 I 0.767
Bo1g102390 Brassica oleracea Bo1g102390 I 0.767
Bo3g003640 Brassica oleracea Bo3g003640 I 0.767
Bra023759 Brassica rapa Bra023759 I 0.767
Bra009160 Brassica rapa Bra009160 I 0.767
Bra005874 Brassica rapa Bra005874 I 0.767
Bo9g176590 Brassica oleracea Bo9g176590 I 0.767
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.767
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.767
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.767
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.767
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.767
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.767
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.767
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.767
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.767
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.767
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.767
Si024070m.g Setaria italica Si024070m.g I 0.767
Si019050m.g Setaria italica Si019050m.g I 0.767
OS11G0707300 Oryza sativa OS11G0707300 I 0.767
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.767
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.767
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.767
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.767
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.767
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.767
OS05G0286100 Oryza sativa OS05G0286100 I 0.767
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.767
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.767
Si019563m.g Setaria italica Si019563m.g I 0.764
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.764
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.764
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.764
F775_00917 Aegilops tauschii F775_00917 I 0.764
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.764
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.764
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.764
OB02G44430 Oryza brachyantha OB02G44430 I 0.764