MDP0000573176 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000573176 T143229_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.822 0.891
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.803 0.935
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.799 0.717
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.799 0.696
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.796 0.891
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.796 0.891
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.796 0.891
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.787 0.826
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.787 0.826
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000573176 C2H2 ZF 112 134
MDP0000573176 C2H2 ZF 168 190

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACLA_019510 Aspergillus clavatus CADACLAG00001947 N 0.000
PITC_060400 Penicillium italicum PITC_060400 N 0.000
PITC_097750 Penicillium italicum PITC_097750 N 0.000
PMAA_009830 Talaromyces marneffei PMAA_009830 N 0.000
PMAA_066010 Talaromyces marneffei PMAA_066010 N 0.000
PVAR5_3342 Byssochlamys spectabilis PVAR5_3342 N 0.000
PVAR5_4370 Byssochlamys spectabilis PVAR5_4370 N 0.000
TSTA_028200 Talaromyces stipitatus TSTA_028200 N 0.000
TSTA_059230 Talaromyces stipitatus TSTA_059230 N 0.000
TSTA_086010 Talaromyces stipitatus TSTA_086010 N 0.000
U727_0043385021 Penicillium solitum U727_0043385021 N 0.000
fgenesh1_pm.00168_#_254 Aspergillus carbonarius fgenesh1_pm.00168_#_254 N 0.000
Pc16g14530 Penicillium chrysogenum Pc16g14530 N 0.000
PMAA_009830 Penicillium marneffei PMAA_009830 N 0.000
PEX1_072890 Penicillium expansum PEX1_072890 N 0.000
PDE_06947 Penicillium oxalicum PDE_06947 N 0.000
ACLA_038020 Aspergillus clavatus CADACLAG00003798 N 0.000
CADAFLAG00002645 Aspergillus flavus CADAFLAG00002645 N 0.000
CADANGAG00012871 Aspergillus niger CADANGAG00012871 N 0.000
ANIA_04972 Aspergillus nidulans CADANIAG00005423 N 0.000
CADAORAG00001170 Aspergillus oryzae CADAORAG00001170 N 0.000
ATEG_04546 Aspergillus terreus CADATEAG00006087 N 0.000
NFIA_067130 Neosartorya fischeri CADNFIAG00006387 N 0.000
EURHEDRAFT_399235 Aspergillus ruber EURHEDRAFT_399235 N 0.000
EURHEDRAFT_513286 Aspergillus ruber EURHEDRAFT_513286 N 0.000
PCH_Pc16g14530 Penicillium rubens PCH_Pc16g14530 N 0.000
PDE_00521 Penicillium oxalicum PDE_00521 N 0.000
PDE_02373 Penicillium oxalicum PDE_02373 N 0.000
PDE_04706 Penicillium oxalicum PDE_04706 N 0.000
PMAA_066010 Penicillium marneffei PMAA_066010 N 0.000