Pavir.Da02143 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Da02143 T143337_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da02143.1.p C2H2 ZF 153 176

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA06G0040900 Oryza glaberrima ORGLA06G0040900 N 0.827
OPUNC06G04230 Oryza punctata OPUNC06G04230 N 0.827
ORUFI06G04410 Oryza rufipogon ORUFI06G04410 N 0.827
OS06G0166200 Oryza sativa OS06G0166200 N 0.827
Si006584m.g Setaria italica Si006584m.g N 0.827
Sb10g004570 Sorghum bicolor Sb10g004570 N 0.827
ONIVA06G05620 Oryza nivara ONIVA06G05620 N 0.827
OMERI06G05540 Oryza meridionalis OMERI06G05540 N 0.827
BGIOSGA022379 Oryza indica BGIOSGA022379 N 0.827
OB06G14080 Oryza brachyantha OB06G14080 N 0.827
OGLUM06G04550 Oryza glumaepatula OGLUM06G04550 N 0.827
Pavir.J33131 Panicum virgatum Pavir.J33131 N 0.817
GRMZM2G086277 Zea mays GRMZM2G086277 N 0.817
MLOC_71770 Hordeum vulgare MLOC_71770 N 0.788
BRADI1G48330 Brachypodium distachyon BRADI1G48330 N 0.778
LPERR06G03990 Leersia perrieri LPERR06G03990 N 0.769