Pavir.Fa00691 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Fa00691 T143354_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.759 0.884
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.759 0.884
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fa00691.1.p C2H2 ZF 144 165
Pavir.Fa00691.1.p C2H2 ZF 165 191
Pavir.Fa00691.2.p C2H2 ZF 144 171
Pavir.Fa00691.2.p C2H2 ZF 165 184

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

Invalid Input OrderBy

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action