Pavir.Ha01090 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ha01090 T143368_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZFP5
M01851_2.00
Arabidopsis thaliana
DSWTNNNN

NNNNAWSH
PBM
Weirauch et al.(2014)
pTH7539
0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ha01090.1.p C2H2 ZF 39 61

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si028367m.g Setaria italica Si028367m.g I 0.827
TCM_044725 Theobroma cacao TCM_044725 I 0.815
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I 0.815
GLYMA06G14783 Glycine max GLYMA06G14783 I 0.815
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I 0.815
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I 0.815
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I 0.815
Pavir.J36164 Panicum virgatum Pavir.J36164 I 0.814
GRMZM2G108818 Zea mays GRMZM2G108818 I 0.814
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I 0.814
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I 0.814
Sb02g025390 Sorghum bicolor Sb02g025390 I 0.814
Si031489m.g Setaria italica Si031489m.g I 0.814
Bo9g011450 Brassica oleracea Bo9g011450 I 0.812
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.812
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.812
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.812
F775_01070 Aegilops tauschii F775_01070 I 0.776
TRIUR3_34498 Triticum urartu TRIUR3_34498 I 0.774
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.769
Ca_08116 Cicer arietinum Ca_08116 I 0.769
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.767
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.767
Sb01g034110 Sorghum bicolor Sb01g034110 I 0.767
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.767
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.767
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.767
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.767
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.767
Bo9g166240 Brassica oleracea Bo9g166240 I 0.767
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.767
Bra008787 Brassica rapa Bra008787 I 0.767
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.767
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I 0.767
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I 0.767
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I 0.767
Bra028724 Brassica rapa Bra028724 I 0.767
GIS2 Arabidopsis thaliana AT5G06650 I 0.767
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.767
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.767
GRMZM2G403590 Zea mays GRMZM2G403590 I 0.767
GRMZM2G115388 Zea mays GRMZM2G115388 I 0.767
Bo2g007320 Brassica oleracea Bo2g007320 I 0.767
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.767
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.767
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.767
LPERR08G07840 Leersia perrieri LPERR08G07840 I 0.767
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.766
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I 0.766
Carubv10003685m.g Capsella rubella Carubv10003685m.g I 0.766
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.766
30045.m000471 Ricinus communis 30045.m000471 I 0.766
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.766
Bo8g109510 Brassica oleracea Bo8g109510 I 0.766
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.766
cassava44297.m1 Manihot esculenta cassava44297.m1 I 0.766
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I 0.766
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.766
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.766
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.766
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.766
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.766
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.766
OBART09G11250 Oryza barthii OBART09G11250 I 0.766
GRMZM2G037574 Zea mays GRMZM2G037574 I 0.766
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.766
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.766
OB09G17800 Oryza brachyantha OB09G17800 I 0.766
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.766
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.766
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.766
ZFP5 Arabidopsis thaliana AT1G10480 D 0.766
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.766
OS09G0431900 Oryza sativa OS09G0431900 I 0.766
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.764
MDP0000165710 Malus domestica MDP0000165710 I 0.764
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I 0.764
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.764
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.764
MDP0000121370 Malus domestica MDP0000121370 I 0.764
PK10012.1 Cannabis sativa PK10012.1 I 0.764
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.764
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.764
F775_42450 Aegilops tauschii F775_42450 I 0.764
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.764
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.764
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.764
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.764
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.764
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.764
Si037914m.g Setaria italica Si037914m.g I 0.764
Pm008291 Prunus mume Pm008291 I 0.764
Bo2g155500 Brassica oleracea Bo2g155500 N 0.757
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.757
Bra020571 Brassica rapa Bra020571 N 0.757
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N 0.757