Pavir.Ia03096 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ia03096 T143379_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.764 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03096.1.p C2H2 ZF 33 55
Pavir.Ia03096.2.p C2H2 ZF 33 55

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.827
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.827
Si037914m.g Setaria italica Si037914m.g I 0.827
GRMZM2G037574 Zea mays GRMZM2G037574 I 0.825
GRMZM2G115388 Zea mays GRMZM2G115388 I 0.824
GRMZM2G403590 Zea mays GRMZM2G403590 I 0.824
Sb01g034110 Sorghum bicolor Sb01g034110 I 0.824
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.814
PK10012.1 Cannabis sativa PK10012.1 I 0.814
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.779
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.779
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.777
OBART09G11250 Oryza barthii OBART09G11250 I 0.777
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.777
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.777
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.777
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.777
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.777
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.777
Si031489m.g Setaria italica Si031489m.g I 0.777
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.777
Sb02g025390 Sorghum bicolor Sb02g025390 I 0.777
OB09G17800 Oryza brachyantha OB09G17800 I 0.777
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.777
OS09G0431900 Oryza sativa OS09G0431900 I 0.777
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.777
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.777
Pavir.J36164 Panicum virgatum Pavir.J36164 I 0.777
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I 0.777
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.777
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.777
GRMZM2G108818 Zea mays GRMZM2G108818 I 0.777
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.777
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I 0.777
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I 0.776
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I 0.776
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.769
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.769
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.769
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.769
Bo9g011450 Brassica oleracea Bo9g011450 I 0.769
MDP0000121370 Malus domestica MDP0000121370 I 0.769
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.769
F775_42450 Aegilops tauschii F775_42450 I 0.769
MDP0000165710 Malus domestica MDP0000165710 I 0.769
F775_01070 Aegilops tauschii F775_01070 I 0.767
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.766
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I 0.766
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.766
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.766
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.766
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I 0.766
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.766
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.766
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I 0.766
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.766
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I 0.766
GIS2 Arabidopsis thaliana AT5G06650 I 0.766
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I 0.766
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.766
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.766
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.766
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.766
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.766
LPERR08G07840 Leersia perrieri LPERR08G07840 I 0.766
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.766
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.766
GLYMA06G14783 Glycine max GLYMA06G14783 I 0.766
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.766
Bo9g166240 Brassica oleracea Bo9g166240 I 0.766
Bra008787 Brassica rapa Bra008787 I 0.766
Bra028724 Brassica rapa Bra028724 I 0.766
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.766
Bo2g007320 Brassica oleracea Bo2g007320 I 0.766
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I 0.766
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.766
TRIUR3_34498 Triticum urartu TRIUR3_34498 I 0.766
Pm008291 Prunus mume Pm008291 I 0.766
TCM_044725 Theobroma cacao TCM_044725 I 0.766
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I 0.764
cassava44297.m1 Manihot esculenta cassava44297.m1 I 0.764
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.764
ZFP5 Arabidopsis thaliana AT1G10480 D 0.764
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.764
Bo8g109510 Brassica oleracea Bo8g109510 I 0.764
30045.m000471 Ricinus communis 30045.m000471 I 0.764
Ca_08116 Cicer arietinum Ca_08116 I 0.764
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I 0.764
Si028367m.g Setaria italica Si028367m.g I 0.764
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.764
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.764
Carubv10003685m.g Capsella rubella Carubv10003685m.g I 0.764
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.757