Pavir.Ia03263 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ia03263 T143380_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZFP5
M01851_2.00
Arabidopsis thaliana
DSWTNNNN

NNNNAWSH
PBM
Weirauch et al.(2014)
pTH7539
0.764 0.652
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03263.1.p C2H2 ZF 36 58

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA000583 Oryza indica BGIOSGA000583 N 0.000
BGIOSGA004701 Oryza indica BGIOSGA004701 N 0.000
BGIOSGA004703 Oryza indica BGIOSGA004703 I 0.000
BGIOSGA036760 Oryza indica BGIOSGA036760 N 0.000
Bo3g035140 Brassica oleracea Bo3g035140 I 0.000
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.000
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.000
Bra000203 Brassica rapa Bra000203 I 0.000
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I 0.000
BRADI2G53510 Brachypodium distachyon BRADI2G53510 I 0.000
Cla021486 Citrullus lanatus Cla021486 I 0.000
Cucsa.259110 Cucumis sativus Cucsa.259110 I 0.000
evm.TU.supercontig_180.9 Carica papaya evm.TU.supercontig_180.9 I 0.000
F775_02479 Aegilops tauschii F775_02479 N 0.000
F775_04954 Aegilops tauschii F775_04954 N 0.000
F775_22564 Aegilops tauschii F775_22564 I 0.000
F775_23182 Aegilops tauschii F775_23182 I 0.000
F775_23296 Aegilops tauschii F775_23296 N 0.000
gene19019-v1.0-hybrid Fragaria vesca gene19019-v1.0-hybrid I 0.000
Gorai.003G085500 Gossypium raimondii Gorai.003G085500 I 0.000
Gorai.004G160100 Gossypium raimondii Gorai.004G160100 I 0.000
Gorai.008G250300 Gossypium raimondii Gorai.008G250300 I 0.000
GRMZM2G005207 Zea mays GRMZM2G005207 I 0.000
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.000
GRMZM2G065290 Zea mays GRMZM2G065290 I 0.000
GRMZM2G158328 Zea mays GRMZM2G158328 I 0.000
GRMZM2G382350 Zea mays GRMZM2G382350 I 0.000
GRMZM2G400559 Zea mays GRMZM2G400559 N 0.000
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
LPERR01G30470 Leersia perrieri LPERR01G30470 N 0.000
LPERR01G30490 Leersia perrieri LPERR01G30490 I 0.000
LPERR10G04210 Leersia perrieri LPERR10G04210 I 0.000
MLOC_3853 Hordeum vulgare MLOC_3853 N 0.000
MLOC_6114 Hordeum vulgare MLOC_6114 I 0.000
MLOC_66612 Hordeum vulgare MLOC_66612 I 0.000
MTR_8g096730 Medicago truncatula MTR_8g096730 I 0.000
OB01G44130 Oryza brachyantha OB01G44130 I 0.000
OB01G44140 Oryza brachyantha OB01G44140 I 0.000
OBART01G35280 Oryza barthii OBART01G35280 N 0.000
OBART01G35310 Oryza barthii OBART01G35310 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OBART10G05920 Oryza barthii OBART10G05920 N 0.000
OBART12G00800 Oryza barthii OBART12G00800 N 0.000
OGLUM01G39350 Oryza glumaepatula OGLUM01G39350 N 0.000
OGLUM01G39380 Oryza glumaepatula OGLUM01G39380 N 0.000
OGLUM05G21430 Oryza glumaepatula OGLUM05G21430 N 0.000
OGLUM05G21470 Oryza glumaepatula OGLUM05G21470 I 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM12G01320 Oryza glumaepatula OGLUM12G01320 N 0.000
OLONG_000628 Oryza longistaminata OLONG_000628 N 0.000
OLONG_022888 Oryza longistaminata OLONG_022888 N 0.000
OLONG_027124 Oryza longistaminata OLONG_027124 I 0.000
OLONG_028722 Oryza longistaminata OLONG_028722 N 0.000
OMERI01G32440 Oryza meridionalis OMERI01G32440 N 0.000
OMERI01G32480 Oryza meridionalis OMERI01G32480 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
OMERI10G04260 Oryza meridionalis OMERI10G04260 N 0.000
OMERI12G00120 Oryza meridionalis OMERI12G00120 N 0.000
ONIVA01G40310 Oryza nivara ONIVA01G40310 N 0.000
ONIVA01G40340 Oryza nivara ONIVA01G40340 I 0.000
ONIVA01G40380 Oryza nivara ONIVA01G40380 N 0.000
ONIVA12G00800 Oryza nivara ONIVA12G00800 N 0.000
OPUNC01G34260 Oryza punctata OPUNC01G34260 N 0.000
OPUNC01G34270 Oryza punctata OPUNC01G34270 N 0.000
OPUNC01G34290 Oryza punctata OPUNC01G34290 N 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
OPUNC10G05310 Oryza punctata OPUNC10G05310 N 0.000
OPUNC12G00950 Oryza punctata OPUNC12G00950 N 0.000
ORGLA01G0291600 Oryza glaberrima ORGLA01G0291600 N 0.000
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I 0.000
ORGLA01G0292000 Oryza glaberrima ORGLA01G0292000 N 0.000
ORGLA10G0049300 Oryza glaberrima ORGLA10G0049300 N 0.000
ORGLA12G0007100 Oryza glaberrima ORGLA12G0007100 N 0.000
ORUFI01G38630 Oryza rufipogon ORUFI01G38630 N 0.000
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I 0.000
ORUFI01G38680 Oryza rufipogon ORUFI01G38680 N 0.000
ORUFI12G01140 Oryza rufipogon ORUFI12G01140 N 0.000
OS01G0820400 Oryza sativa OS01G0820400 N 0.000
OS01G0820700 Oryza sativa OS01G0820700 I 0.000
Pavir.Ca00178 Panicum virgatum Pavir.Ca00178 N 0.000
Pavir.Ea03257 Panicum virgatum Pavir.Ea03257 I 0.000
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I 0.000
Pavir.Eb03562 Panicum virgatum Pavir.Eb03562 I 0.000
Pavir.Ib01500 Panicum virgatum Pavir.Ib01500 N 0.000
Pavir.J31756 Panicum virgatum Pavir.J31756 I 0.000
Pavir.J37617 Panicum virgatum Pavir.J37617 N 0.000
Pavir.J38024 Panicum virgatum Pavir.J38024 N 0.000
Sb01g036870 Sorghum bicolor Sb01g036870 N 0.000
Sb03g038170 Sorghum bicolor Sb03g038170 I 0.000
Sb03g038180 Sorghum bicolor Sb03g038180 I 0.000
Sb03g038200 Sorghum bicolor Sb03g038200 N 0.000
Si002121m.g Setaria italica Si002121m.g I 0.000
Si004791m.g Setaria italica Si004791m.g I 0.000
Si005138m.g Setaria italica Si005138m.g N 0.000
Si012735m.g Setaria italica Si012735m.g I 0.000
Si039519m.g Setaria italica Si039519m.g N 0.000
TCM_016343 Theobroma cacao TCM_016343 I 0.000
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I 0.000
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I 0.000
Traes_3B_8B0D448D8 Triticum aestivum Traes_3B_8B0D448D8 I 0.000
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I 0.000
Traes_3DL_7456F61A3 Triticum aestivum Traes_3DL_7456F61A3 N 0.000
TRIUR3_16097 Triticum urartu TRIUR3_16097 N 0.000
TRIUR3_26571 Triticum urartu TRIUR3_26571 N 0.000
TRIUR3_27575 Triticum urartu TRIUR3_27575 I 0.000
TRIUR3_31234 Triticum urartu TRIUR3_31234 N 0.000