Pavir.J01834 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J01834 T143398_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.763 0.791
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.763 0.791
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01834.1.p C2H2 ZF 236 258
Pavir.J01834.1.p C2H2 ZF 258 284

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
STOP1 Arabidopsis thaliana AT1G34370 D 0.763
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.763
MDP0000141403 Malus domestica MDP0000141403 I 0.763
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.763
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.763
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.763
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.763
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.769
mgf000060m Mimulus guttatus mgf000060m I 0.763
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.757
MDP0000199559 Malus domestica MDP0000199559 I 0.763
MDP0000551046 Malus domestica MDP0000551046 I 0.763
PK23301.1 Cannabis sativa PK23301.1 I 0.763
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.763
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.763
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.763
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.763
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.763
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.827
MDP0000807856 Malus domestica MDP0000807856 I 0.763
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.763
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.783
Pm022201 Prunus mume Pm022201 I 0.763
Bo8g027000 Brassica oleracea Bo8g027000 I 0.763
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.763
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.763
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.763
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.763
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.763
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.818
OB03G47410 Oryza brachyantha OB03G47410 I 0.818
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.763
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.763
Cla016623 Citrullus lanatus Cla016623 I 0.757
Ca_04300 Cicer arietinum Ca_04300 I 0.763
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.763
Si036555m.g Setaria italica Si036555m.g I 0.827
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.763
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.763
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.827
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.769
GRMZM2G470422 Zea mays GRMZM2G470422 N 0.758