Pavir.J03079 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J03079 T143401_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.767 0.698
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.758 0.698
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03079.1.p C2H2 ZF 56 78
Pavir.J03079.1.p C2H2 ZF 106 125

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ha00194 Panicum virgatum Pavir.Ha00194 I 0.799
Pavir.Hb00003 Panicum virgatum Pavir.Hb00003 I 0.799
Pavir.Hb00056 Panicum virgatum Pavir.Hb00056 I 0.799
Si026973m.g Setaria italica Si026973m.g I 0.792
Pavir.Da01563 Panicum virgatum Pavir.Da01563 I 0.792
Si027432m.g Setaria italica Si027432m.g I 0.792
Pavir.Da00814 Panicum virgatum Pavir.Da00814 I 0.792
Pavir.Da00815 Panicum virgatum Pavir.Da00815 I 0.792
GRMZM2G338056 Zea mays GRMZM2G338056 I 0.786
Pavir.J30713 Panicum virgatum Pavir.J30713 I 0.786
Pavir.J14296 Panicum virgatum Pavir.J14296 I 0.786
Sb05g027450 Sorghum bicolor Sb05g027450 I 0.781
LPERR05G15220 Leersia perrieri LPERR05G15220 I 0.775
AC206217.2_FG006 Zea mays AC206217.2_FG006 I 0.770
Sb09g022660 Sorghum bicolor Sb09g022660 I 0.770
Pavir.J32634 Panicum virgatum Pavir.J32634 I 0.770
Pavir.Ea03334 Panicum virgatum Pavir.Ea03334 I 0.770
Pavir.Hb00023 Panicum virgatum Pavir.Hb00023 I 0.769
Pavir.Da01393 Panicum virgatum Pavir.Da01393 I 0.769
ORGLA05G0010800 Oryza glaberrima ORGLA05G0010800 I 0.768
ORUFI05G01070 Oryza rufipogon ORUFI05G01070 I 0.768
Pavir.Ca00650 Panicum virgatum Pavir.Ca00650 I 0.768
ORUFI03G13310 Oryza rufipogon ORUFI03G13310 I 0.768
OPUNC03G12220 Oryza punctata OPUNC03G12220 I 0.768
TRIUR3_11899 Triticum urartu TRIUR3_11899 I 0.768
OMERI05G01120 Oryza meridionalis OMERI05G01120 I 0.768
ONIVA01G18540 Oryza nivara ONIVA01G18540 I 0.768
TRIUR3_04728 Triticum urartu TRIUR3_04728 I 0.768
OS03G0279700 Oryza sativa OS03G0279700 I 0.768
ONIVA05G01090 Oryza nivara ONIVA05G01090 I 0.768
ORGLA03G0122200 Oryza glaberrima ORGLA03G0122200 I 0.768
OS05G0114400 Oryza sativa OS05G0114400 I 0.768
Traes_1AS_B282BFB83 Triticum aestivum Traes_1AS_B282BFB83 I 0.768
Traes_1AS_8F01029FE Triticum aestivum Traes_1AS_8F01029FE I 0.768
Traes_1BS_22E395F75 Triticum aestivum Traes_1BS_22E395F75 I 0.768
Traes_1DS_75AF80583 Triticum aestivum Traes_1DS_75AF80583 I 0.768
Traes_1BS_527ED00B9 Triticum aestivum Traes_1BS_527ED00B9 I 0.768
Si037660m.g Setaria italica Si037660m.g I 0.768
OMERI03G11850 Oryza meridionalis OMERI03G11850 I 0.768
Sb09g001560 Sorghum bicolor Sb09g001560 I 0.768
Traes_1BS_7B7D5282B Triticum aestivum Traes_1BS_7B7D5282B I 0.768
Traes_1DS_D1F453705 Triticum aestivum Traes_1DS_D1F453705 I 0.768
Si023353m.g Setaria italica Si023353m.g I 0.768
Traes_1DS_CE96E8BF0 Triticum aestivum Traes_1DS_CE96E8BF0 I 0.768
Traes_4AS_D4763E468 Triticum aestivum Traes_4AS_D4763E468 I 0.768
OPUNC05G00940 Oryza punctata OPUNC05G00940 I 0.768
LPERR03G11200 Leersia perrieri LPERR03G11200 I 0.768
Pavir.Ib01297 Panicum virgatum Pavir.Ib01297 I 0.768
Pavir.Ia03651 Panicum virgatum Pavir.Ia03651 I 0.768
LPERR05G01000 Leersia perrieri LPERR05G01000 I 0.768
Pavir.Ia00294 Panicum virgatum Pavir.Ia00294 I 0.768
Pavir.Ib04509 Panicum virgatum Pavir.Ib04509 I 0.768
GRMZM2G112251 Zea mays GRMZM2G112251 I 0.768
BGIOSGA010987 Oryza indica BGIOSGA010987 I 0.768
BGIOSGA018935 Oryza indica BGIOSGA018935 I 0.768
BRADI2G37430 Brachypodium distachyon BRADI2G37430 I 0.768
F775_52535 Aegilops tauschii F775_52535 I 0.768
MLOC_39001 Hordeum vulgare MLOC_39001 I 0.768
GRMZM2G048154 Zea mays GRMZM2G048154 I 0.768
OBART05G01050 Oryza barthii OBART05G01050 I 0.768
OGLUM03G12700 Oryza glumaepatula OGLUM03G12700 I 0.768
OGLUM05G01060 Oryza glumaepatula OGLUM05G01060 I 0.768
ORGLA05G0167500 Oryza glaberrima ORGLA05G0167500 I 0.767
ONIVA05G20190 Oryza nivara ONIVA05G20190 I 0.767
OGLUM05G20400 Oryza glumaepatula OGLUM05G20400 I 0.767
OBART05G19310 Oryza barthii OBART05G19310 I 0.767
Cagra.7309s0001 Capsella grandiflora Cagra.7309s0001 I 0.767
Carubv10018142m.g Capsella rubella Carubv10018142m.g I 0.767
ZAT7 Arabidopsis thaliana AT3G46090 D 0.767
OMERI05G16850 Oryza meridionalis OMERI05G16850 I 0.767
ZAT8 Arabidopsis thaliana AT3G46080 I 0.767
fgenesh2_kg.5__981__AT3G46090.1 Arabidopsis lyrata fgenesh2_kg.5__981__AT3G46090.1 I 0.767
ORUFI05G20520 Oryza rufipogon ORUFI05G20520 I 0.767
Bostr.18473s0333 Boechera stricta Bostr.18473s0333 I 0.767
OS05G0460900 Oryza sativa OS05G0460900 I 0.767
GRMZM2G061626 Zea mays GRMZM2G061626 I 0.764
Traes_4DS_276818E4F Triticum aestivum Traes_4DS_276818E4F I 0.762
ORUFI11G25330 Oryza rufipogon ORUFI11G25330 I 0.762
OB11G27860 Oryza brachyantha OB11G27860 I 0.762
F775_14723 Aegilops tauschii F775_14723 I 0.762
Pavir.Ha00193 Panicum virgatum Pavir.Ha00193 I 0.762
ORGLA11G0188100 Oryza glaberrima ORGLA11G0188100 I 0.762
MLOC_76196 Hordeum vulgare MLOC_76196 I 0.762
OS11G0702400 Oryza sativa OS11G0702400 I 0.762
BGIOSGA033524 Oryza indica BGIOSGA033524 I 0.762
F775_18609 Aegilops tauschii F775_18609 I 0.762
OBART11G23480 Oryza barthii OBART11G23480 I 0.762
OPUNC11G19830 Oryza punctata OPUNC11G19830 I 0.762
GRMZM2G002805 Zea mays GRMZM2G002805 I 0.759
Si008395m.g Setaria italica Si008395m.g I 0.759
TRIUR3_01057 Triticum urartu TRIUR3_01057 N 0.759
Pavir.J04850 Panicum virgatum Pavir.J04850 I 0.759
scaffold_501490.1 Arabidopsis lyrata scaffold_501490.1 I 0.758
OB03G22700 Oryza brachyantha OB03G22700 I 0.758
AT3G46070 Arabidopsis thaliana AT3G46070 D 0.758
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.757
TRIUR3_15912 Triticum urartu TRIUR3_15912 I 0.757
Traes_5DL_4E890ABF3 Triticum aestivum Traes_5DL_4E890ABF3 I 0.757
TRIUR3_01063 Triticum urartu TRIUR3_01063 I 0.757
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.757
F775_18611 Aegilops tauschii F775_18611 I 0.757
Bra019477 Brassica rapa Bra019477 I 0.757
F775_30269 Aegilops tauschii F775_30269 I 0.757
F775_52290 Aegilops tauschii F775_52290 I 0.757
Bo1g067420 Brassica oleracea Bo1g067420 I 0.757
Traes_5BL_630A8A142 Triticum aestivum Traes_5BL_630A8A142 I 0.757
Traes_5BL_D53A846BE Triticum aestivum Traes_5BL_D53A846BE I 0.757
Thhalv10002839m.g Eutrema salsugineum Thhalv10002839m.g I 0.757
Traes_5BL_63AE36D3A Triticum aestivum Traes_5BL_63AE36D3A I 0.757
Traes_5BL_F74D668D9 Triticum aestivum Traes_5BL_F74D668D9 I 0.757
OS03G0820300 Oryza sativa OS03G0820300 I 0.756
LPERR03G33230 Leersia perrieri LPERR03G33230 I 0.756
GSMUA_Achr11G23970_001 Musa acuminata GSMUA_Achr11G23970_001 I 0.756
MLOC_19822 Hordeum vulgare MLOC_19822 I 0.756
OGLUM03G38900 Oryza glumaepatula OGLUM03G38900 I 0.756
OMERI03G35870 Oryza meridionalis OMERI03G35870 I 0.756
GSMUA_Achr10G13530_001 Musa acuminata GSMUA_Achr10G13530_001 I 0.756
F775_30896 Aegilops tauschii F775_30896 I 0.756
BGIOSGA013831 Oryza indica BGIOSGA013831 I 0.756
BRADI1G03770 Brachypodium distachyon BRADI1G03770 I 0.756
BRADI4G09410 Brachypodium distachyon BRADI4G09410 I 0.756
F775_30895 Aegilops tauschii F775_30895 I 0.756
ONIVA03G40710 Oryza nivara ONIVA03G40710 I 0.756
ORGLA03G0358100 Oryza glaberrima ORGLA03G0358100 I 0.756
Traes_5BL_BB99746DD Triticum aestivum Traes_5BL_BB99746DD I 0.756
Traes_5DL_90F570468 Triticum aestivum Traes_5DL_90F570468 I 0.756
Traes_5DL_9D713AD9C Triticum aestivum Traes_5DL_9D713AD9C I 0.756
TRIUR3_01060 Triticum urartu TRIUR3_01060 I 0.756
Traes_5BL_9C687EE11 Triticum aestivum Traes_5BL_9C687EE11 I 0.756
Traes_5BL_6F2D345E2 Triticum aestivum Traes_5BL_6F2D345E2 I 0.756
ORUFI03G40740 Oryza rufipogon ORUFI03G40740 I 0.756
Traes_5BL_3A9D3CEEF Triticum aestivum Traes_5BL_3A9D3CEEF I 0.756
Traes_5BL_3B50B6963 Triticum aestivum Traes_5BL_3B50B6963 I 0.756
Traes_5BL_56E52A2FC Triticum aestivum Traes_5BL_56E52A2FC N 0.756
TRIUR3_01065 Triticum urartu TRIUR3_01065 I 0.756