Pavir.J06328 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J06328 T143407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY

RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.827 0.930
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN

NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.827 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J06328.1.p C2H2 ZF 127 149
Pavir.J06328.1.p C2H2 ZF 149 175

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMAG_02700 Allomyces macrogynus AMAG_02700 N 0.000
AMAG_06322 Allomyces macrogynus AMAG_06322 N 0.000
H311_02800 Anncaliia algerae H311_02800 N 0.000
ENSCSAG00000000068 Chlorocebus sabaeus ENSCSAG00000000068 I 0.000
CLEC012261 Cimex lectularius CLEC012261 I 0.000
csin111072 Clonorchis sinensis csin111072 I 0.000
Kwal_11092 Kluyveromyces waltii Kwal_11092 I 0.000
SAKL0A05610g Lachancea kluyveri SAKL0A05610g I 0.000
LDEC008003 Leptinotarsa decemlineata LDEC008003 I 0.000
fgeneshNG_pg.scaffold_64000050 Naegleria gruberi fgeneshNG_pg.scaffold_64000050 N 0.000
NCER_101892 Nosema ceranae NCER_101892 N 0.000
M896_051500 Ordospora colligata M896_051500 N 0.000
PHUM569520 Pediculus humanus PHUM569520 I 0.000
RPRC000231 Rhodnius prolixus RPRC000231 I 0.000
7936_YGL096W Saccharomyces mikatae 7936_YGL096W I 0.000
Smp_154790 Schistosoma mansoni Smp_154790 I 0.000
SMU15028100 Schmidtea mediterranea SMU15028100 I 0.000
SMAR003960 Strigamia maritima SMAR003960 I 0.000
TSTA_022330 Talaromyces stipitatus TSTA_022330 N 0.000
TC006040 Tribolium castaneum TC006040 I 0.000
VICG_02118 Vittaforma corneae VICG_02118 I 0.000
BN7_5448 Wickerhamomyces ciferrii BN7_5448 N 0.000
L798_02881 Zootermopsis nevadensis L798_02881 I 0.000