CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J14296
(
Panicum virgatum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pavir.J14296
T143415_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.772
0.696
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.764
0.717
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J14296.1.p
C2H2 ZF
50
72
FRCRTCGRAFATFQALGGHRTSH
Pavir.J14296.1.p
C2H2 ZF
100
122
HRCDTCGLVFSTGQALGGHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Panicum virgatum
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J30713
Panicum virgatum
Pavir.J30713
I
0.826
Si027432m.g
Setaria italica
Si027432m.g
I
0.821
GRMZM2G338056
Zea mays
GRMZM2G338056
I
0.821
Pavir.Da00815
Panicum virgatum
Pavir.Da00815
I
0.821
Si026973m.g
Setaria italica
Si026973m.g
I
0.821
Pavir.Da00814
Panicum virgatum
Pavir.Da00814
I
0.821
Sb05g027450
Sorghum bicolor
Sb05g027450
I
0.816
Pavir.Hb00056
Panicum virgatum
Pavir.Hb00056
I
0.815
Pavir.Da01563
Panicum virgatum
Pavir.Da01563
I
0.815
Pavir.Hb00003
Panicum virgatum
Pavir.Hb00003
I
0.815
Pavir.Ha00194
Panicum virgatum
Pavir.Ha00194
I
0.815
Traes_4DS_276818E4F
Triticum aestivum
Traes_4DS_276818E4F
I
0.797
F775_14723
Aegilops tauschii
F775_14723
I
0.797
ORUFI11G25330
Oryza rufipogon
ORUFI11G25330
I
0.796
OS11G0702400
Oryza sativa
OS11G0702400
I
0.796
ORGLA11G0188100
Oryza glaberrima
ORGLA11G0188100
I
0.796
BGIOSGA033524
Oryza indica
BGIOSGA033524
I
0.796
OB11G27860
Oryza brachyantha
OB11G27860
I
0.796
OPUNC11G19830
Oryza punctata
OPUNC11G19830
I
0.796
OBART11G23480
Oryza barthii
OBART11G23480
I
0.796
BRADI4G09410
Brachypodium distachyon
BRADI4G09410
I
0.792
MLOC_76196
Hordeum vulgare
MLOC_76196
I
0.786
Pavir.J03079
Panicum virgatum
Pavir.J03079
I
0.786
GSMUA_Achr11G23970_001
Musa acuminata
GSMUA_Achr11G23970_001
I
0.784
TRIUR3_01060
Triticum urartu
TRIUR3_01060
I
0.784
F775_30896
Aegilops tauschii
F775_30896
I
0.784
MLOC_14920
Hordeum vulgare
MLOC_14920
I
0.784
Traes_5DL_4B4927090
Triticum aestivum
Traes_5DL_4B4927090
I
0.784
Pavir.Cb00699
Panicum virgatum
Pavir.Cb00699
N
0.778
F775_08752
Aegilops tauschii
F775_08752
I
0.778
Pavir.Ha00193
Panicum virgatum
Pavir.Ha00193
I
0.774
Lus10040312.g
Linum usitatissimum
Lus10040312.g
I
0.774
SapurV1A.0008s0970
Salix purpurea
SapurV1A.0008s0970
I
0.773
Bostr.18473s0333
Boechera stricta
Bostr.18473s0333
I
0.772
OBART05G19310
Oryza barthii
OBART05G19310
I
0.772
OS05G0460900
Oryza sativa
OS05G0460900
I
0.772
Cagra.7309s0001
Capsella grandiflora
Cagra.7309s0001
I
0.772
OGLUM05G20400
Oryza glumaepatula
OGLUM05G20400
I
0.772
Carubv10018142m.g
Capsella rubella
Carubv10018142m.g
I
0.772
ONIVA05G20190
Oryza nivara
ONIVA05G20190
I
0.772
OMERI05G16850
Oryza meridionalis
OMERI05G16850
I
0.772
ORGLA05G0167500
Oryza glaberrima
ORGLA05G0167500
I
0.772
ORUFI05G20520
Oryza rufipogon
ORUFI05G20520
I
0.772
ZAT7
Arabidopsis thaliana
AT3G46090
D
0.772
ZAT8
Arabidopsis thaliana
AT3G46080
I
0.772
fgenesh2_kg.5__981__AT3G46090.1
Arabidopsis lyrata
fgenesh2_kg.5__981__AT3G46090.1
I
0.772
Pavir.Da01393
Panicum virgatum
Pavir.Da01393
I
0.768
Pavir.Hb00023
Panicum virgatum
Pavir.Hb00023
I
0.768
GRMZM2G002805
Zea mays
GRMZM2G002805
I
0.765
TRIUR3_01057
Triticum urartu
TRIUR3_01057
N
0.765
GRMZM2G061626
Zea mays
GRMZM2G061626
I
0.765
scaffold_501490.1
Arabidopsis lyrata
scaffold_501490.1
I
0.764
AT3G46070
Arabidopsis thaliana
AT3G46070
D
0.764
F775_18611
Aegilops tauschii
F775_18611
I
0.763
F775_52290
Aegilops tauschii
F775_52290
I
0.763
Carubv10018774m.g
Capsella rubella
Carubv10018774m.g
I
0.763
TRIUR3_15912
Triticum urartu
TRIUR3_15912
I
0.763
Traes_5BL_630A8A142
Triticum aestivum
Traes_5BL_630A8A142
I
0.763
F775_30269
Aegilops tauschii
F775_30269
I
0.763
Traes_5DL_4E890ABF3
Triticum aestivum
Traes_5DL_4E890ABF3
I
0.763
Traes_5BL_F74D668D9
Triticum aestivum
Traes_5BL_F74D668D9
I
0.763
Traes_5BL_D53A846BE
Triticum aestivum
Traes_5BL_D53A846BE
I
0.763
Traes_5BL_63AE36D3A
Triticum aestivum
Traes_5BL_63AE36D3A
I
0.763
Bra019477
Brassica rapa
Bra019477
I
0.763
Cagra.7309s0002
Capsella grandiflora
Cagra.7309s0002
I
0.763
Bo1g067420
Brassica oleracea
Bo1g067420
I
0.763
Thhalv10002839m.g
Eutrema salsugineum
Thhalv10002839m.g
I
0.762
Traes_5BL_3A9D3CEEF
Triticum aestivum
Traes_5BL_3A9D3CEEF
I
0.761
GSMUA_Achr10G13530_001
Musa acuminata
GSMUA_Achr10G13530_001
I
0.761
TRIUR3_01065
Triticum urartu
TRIUR3_01065
I
0.761
Traes_5BL_3B50B6963
Triticum aestivum
Traes_5BL_3B50B6963
I
0.761
BGIOSGA013831
Oryza indica
BGIOSGA013831
I
0.761
Traes_5BL_9C687EE11
Triticum aestivum
Traes_5BL_9C687EE11
I
0.761
Traes_5DL_90F570468
Triticum aestivum
Traes_5DL_90F570468
I
0.761
LPERR03G33230
Leersia perrieri
LPERR03G33230
I
0.761
OGLUM03G38900
Oryza glumaepatula
OGLUM03G38900
I
0.761
OS03G0820300
Oryza sativa
OS03G0820300
I
0.761
Traes_5BL_6F2D345E2
Triticum aestivum
Traes_5BL_6F2D345E2
I
0.761
OMERI03G35870
Oryza meridionalis
OMERI03G35870
I
0.761
ORGLA03G0358100
Oryza glaberrima
ORGLA03G0358100
I
0.761
ONIVA03G40710
Oryza nivara
ONIVA03G40710
I
0.761
ORUFI03G40740
Oryza rufipogon
ORUFI03G40740
I
0.761
Traes_5BL_B038BE0A3
Triticum aestivum
Traes_5BL_B038BE0A3
I
0.760
Traes_5BL_BB99746DD
Triticum aestivum
Traes_5BL_BB99746DD
I
0.760
Eucgr.B02398
Eucalyptus grandis
Eucgr.B02398
I
0.760
Traes_5BL_8DB8274DB1
Triticum aestivum
Traes_5BL_8DB8274DB1
I
0.760
BRADI1G03790
Brachypodium distachyon
BRADI1G03790
I
0.760
Pavir.Ia00292
Panicum virgatum
Pavir.Ia00292
I
0.760
Pavir.J00893
Panicum virgatum
Pavir.J00893
I
0.760
Pavir.J00894
Panicum virgatum
Pavir.J00894
I
0.760
MLOC_67028
Hordeum vulgare
MLOC_67028
I
0.760
F775_22659
Aegilops tauschii
F775_22659
I
0.760
TRIUR3_01063
Triticum urartu
TRIUR3_01063
I
0.760
Traes_5DL_F269EF70D
Triticum aestivum
Traes_5DL_F269EF70D
I
0.760
Traes_5DL_9D713AD9C
Triticum aestivum
Traes_5DL_9D713AD9C
I
0.760
Traes_5DL_50E35B4F3
Triticum aestivum
Traes_5DL_50E35B4F3
I
0.760
BRADI1G03770
Brachypodium distachyon
BRADI1G03770
I
0.760
F775_18608
Aegilops tauschii
F775_18608
I
0.760
Traes_5BL_56E52A2FC
Triticum aestivum
Traes_5BL_56E52A2FC
N
0.760
OB03G46010
Oryza brachyantha
OB03G46010
I
0.760
Si003051m.g
Setaria italica
Si003051m.g
I
0.760
F775_17661
Aegilops tauschii
F775_17661
I
0.760
F775_18609
Aegilops tauschii
F775_18609
I
0.760
MLOC_63032
Hordeum vulgare
MLOC_63032
I
0.760
Sb01g003280
Sorghum bicolor
Sb01g003280
I
0.760
OBART03G39050
Oryza barthii
OBART03G39050
I
0.760
MLOC_19822
Hordeum vulgare
MLOC_19822
I
0.760
GRMZM2G002815
Zea mays
GRMZM2G002815
I
0.760
TRIUR3_12166
Triticum urartu
TRIUR3_12166
I
0.760
F775_30895
Aegilops tauschii
F775_30895
I
0.760
TRIUR3_15911
Triticum urartu
TRIUR3_15911
I
0.760
Pavir.Ia00291
Panicum virgatum
Pavir.Ia00291
I
0.760
Si037251m.g
Setaria italica
Si037251m.g
I
0.760
Si037672m.g
Setaria italica
Si037672m.g
I
0.760
BGIOSGA013832
Oryza indica
BGIOSGA013832
I
0.759
Pavir.Eb03660
Panicum virgatum
Pavir.Eb03660
I
0.759
Pavir.J14338
Panicum virgatum
Pavir.J14338
I
0.759
BRADI2G54500
Brachypodium distachyon
BRADI2G54500
I
0.759
BRADI1G03780
Brachypodium distachyon
BRADI1G03780
I
0.759
TRAES3BF127400030CFD_g
Triticum aestivum
TRAES3BF127400030CFD_g
I
0.759
GRMZM2G307402
Zea mays
GRMZM2G307402
I
0.759
OMERI03G35880
Oryza meridionalis
OMERI03G35880
I
0.759
GRMZM2G376061
Zea mays
GRMZM2G376061
I
0.759
ORGLA03G0358200
Oryza glaberrima
ORGLA03G0358200
I
0.759
ONIVA03G40720
Oryza nivara
ONIVA03G40720
I
0.759
OGLUM03G38910
Oryza glumaepatula
OGLUM03G38910
I
0.759
OS03G0820400
Oryza sativa
OS03G0820400
I
0.759
GRMZM2G112799
Zea mays
GRMZM2G112799
I
0.759
LPERR01G31500
Leersia perrieri
LPERR01G31500
I
0.759
LPERR03G33240
Leersia perrieri
LPERR03G33240
I
0.759
Solyc06g075780.1
Solanum lycopersicum
Solyc06g075780.1
I
0.759
Sb03g039270
Sorghum bicolor
Sb03g039270
I
0.759
PGSC0003DMG401030312
Solanum tuberosum
PGSC0003DMG401030312
I
0.759
GSMUA_Achr11G21920_001
Musa acuminata
GSMUA_Achr11G21920_001
I
0.758
OMERI01G33710
Oryza meridionalis
OMERI01G33710
I
0.758
BGIOSGA004768
Oryza indica
BGIOSGA004768
I
0.758
GSMUA_Achr1G06720_001
Musa acuminata
GSMUA_Achr1G06720_001
I
0.758
Pavir.J04850
Panicum virgatum
Pavir.J04850
I
0.758
OGLUM01G40530
Oryza glumaepatula
OGLUM01G40530
I
0.758
OPUNC01G35470
Oryza punctata
OPUNC01G35470
I
0.758
OS01G0839100
Oryza sativa
OS01G0839100
I
0.758
Sb10g031270
Sorghum bicolor
Sb10g031270
I
0.758
Si008395m.g
Setaria italica
Si008395m.g
I
0.758
Solyc11g073060.1
Solanum lycopersicum
Solyc11g073060.1
I
0.758
GSMUA_Achr11G02250_001
Musa acuminata
GSMUA_Achr11G02250_001
I
0.758
ORGLA01G0304700
Oryza glaberrima
ORGLA01G0304700
I
0.758
ONIVA01G41740
Oryza nivara
ONIVA01G41740
I
0.758
GSMUA_Achr10G06730_001
Musa acuminata
GSMUA_Achr10G06730_001
I
0.758
OPUNC01G35440
Oryza punctata
OPUNC01G35440
I
0.758
MLOC_11626
Hordeum vulgare
MLOC_11626
N
0.758
LPERR05G15220
Leersia perrieri
LPERR05G15220
I
0.757