Pavir.J15191 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J15191 T143417_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.774 0.674
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.774 0.674
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.774 0.674
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.770 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J15191.1.p C2H2 ZF 52 74
Pavir.J15191.1.p C2H2 ZF 109 131

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.827
Si032711m.g Setaria italica Si032711m.g I 0.827
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.821
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.821
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.794
Cla022966 Citrullus lanatus Cla022966 I 0.778
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.778
OS12G0583700 Oryza sativa OS12G0583700 I 0.776
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.776
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.776
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.776
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.776
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.776
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I 0.776
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.776
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.776
AZF3 Arabidopsis thaliana AT5G43170 I 0.776
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.775
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.775
Bo3g142840 Brassica oleracea Bo3g142840 I 0.774
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.774
Bra010922 Brassica rapa Bra010922 I 0.774
ZAT10 Arabidopsis thaliana AT1G27730 D 0.774
Ca_05641 Cicer arietinum Ca_05641 I 0.770
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.770
Bo7g065200 Brassica oleracea Bo7g065200 I 0.770
30174.m008818 Ricinus communis 30174.m008818 I 0.770
mgf017082m Mimulus guttatus mgf017082m I 0.770
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.770
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.770
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.770
ZAT6 Arabidopsis thaliana AT5G04340 D 0.770
Bra009464 Brassica rapa Bra009464 I 0.770
Bra033666 Brassica rapa Bra033666 I 0.770
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.770
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.770
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.770
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.770
Bo9g181170 Brassica oleracea Bo9g181170 I 0.770
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.770
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.770
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.769
mgf021094m Mimulus guttatus mgf021094m I 0.769
Bo7g048650 Brassica oleracea Bo7g048650 I 0.769
Bo5g052290 Brassica oleracea Bo5g052290 I 0.769
Bra032845 Brassica rapa Bra032845 I 0.769
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.769
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.766
OBART03G22570 Oryza barthii OBART03G22570 I 0.766
OB03G31780 Oryza brachyantha OB03G31780 I 0.766
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.766
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.766
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.766
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.766
OS03G0437200 Oryza sativa OS03G0437200 I 0.766
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.766
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.766
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.763
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.763
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I 0.759
Lus10038929.g Linum usitatissimum Lus10038929.g N 0.758
BRADI4G03410 Brachypodium distachyon BRADI4G03410 I 0.758