CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J15191
(
Panicum virgatum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Pavir.J15191
T143417_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.774
0.674
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT
AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.774
0.674
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.774
0.674
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN
NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.770
0.696
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J15191.1.p
C2H2 ZF
52
74
FRCPLCGKAFASYQALGGHKASH
Pavir.J15191.1.p
C2H2 ZF
109
131
YVCTVCRRGFETGQALGGHKRFH
Links
Other
C2H2 ZF
family TFs
Other
Panicum virgatum
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy