Pavir.J31403 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J31403 T143425_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBE
M01858_2.00 		Arabidopsis thaliana
NNNASWN
NWSTNNN		 PBM
Weirauch et al.(2014)
pTH7538 		0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J31403.1.p C2H2 ZF 44 66

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.827
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.827
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.827
OBART04G02370 Oryza barthii OBART04G02370 I 0.827
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.827
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.827
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.827
F775_21953 Aegilops tauschii F775_21953 I 0.827
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.827
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.827
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.827
OB04G12040 Oryza brachyantha OB04G12040 I 0.827
OS04G0168100 Oryza sativa OS04G0168100 I 0.827
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.827
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.817
Cla016442 Citrullus lanatus Cla016442 I 0.817
Si011797m.g Setaria italica Si011797m.g I 0.817
Pm009420 Prunus mume Pm009420 I 0.805
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.805
Cla021878 Citrullus lanatus Cla021878 I 0.805
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.805
29603.m000536 Ricinus communis 29603.m000536 I 0.805
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.805
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.805
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.805
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.805
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.805
Si024070m.g Setaria italica Si024070m.g I 0.805
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.805
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.805
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.805
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.805
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.805
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.805
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.805
MDP0000225209 Malus domestica MDP0000225209 I 0.805
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.805
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.805
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.805
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.805
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.805
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.805
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.805
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.805
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.805
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.805
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.805
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.805
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.805
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.805
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.805
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.805
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.805
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.805
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.805
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.805
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.805
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.805
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.805
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.805
Bo3g003640 Brassica oleracea Bo3g003640 I 0.805
Bo1g102390 Brassica oleracea Bo1g102390 I 0.805
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.805
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.805
Bo1g017920 Brassica oleracea Bo1g017920 I 0.805
OBART11G23770 Oryza barthii OBART11G23770 I 0.805
Bra005874 Brassica rapa Bra005874 I 0.805
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.805
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.805
Bra023759 Brassica rapa Bra023759 I 0.805
Bra013257 Brassica rapa Bra013257 I 0.805
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.805
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.805
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.805
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.805
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.805
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.805
ZFP11 Arabidopsis thaliana AT2G42410 I 0.805
OS11G0707300 Oryza sativa OS11G0707300 I 0.805
SUP Arabidopsis thaliana AT3G23130 I 0.805
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.803
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.803
Ca_12901 Cicer arietinum Ca_12901 I 0.803
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.782
Pm002649 Prunus mume Pm002649 N 0.782
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.780
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.780
TCM_021876 Theobroma cacao TCM_021876 N 0.780
28345.m000111 Ricinus communis 28345.m000111 N 0.780
OB02G10110 Oryza brachyantha OB02G10110 I 0.767
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.767
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.764
Bra009160 Brassica rapa Bra009160 I 0.757
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.757
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.757
RBE Arabidopsis thaliana AT5G06070 D 0.757
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.757
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.757
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.757
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.757
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.757
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.757
Bo9g176590 Brassica oleracea Bo9g176590 I 0.757
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.757
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.757
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.757
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.757
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.757
ONIVA06G26970 Oryza nivara ONIVA06G26970 I 0.757
Cla008944 Citrullus lanatus Cla008944 I 0.757
TCM_021875 Theobroma cacao TCM_021875 I 0.757
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.757
OS05G0286100 Oryza sativa OS05G0286100 I 0.757
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.757
Si019050m.g Setaria italica Si019050m.g I 0.757
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.757
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.757
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.757
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.757
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.757
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.757
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.757
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.757
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.757
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.757
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.757
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.757
OBART05G10090 Oryza barthii OBART05G10090 I 0.757
OB05G18710 Oryza brachyantha OB05G18710 I 0.757
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.757