Pavir.J33131 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J33131 T143429_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33131.1.p C2H2 ZF 155 178
Pavir.J33131.2.p C2H2 ZF 155 178

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29907.m000663 Ricinus communis 29907.m000663 I 0.000
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.000
AGL12 Arabidopsis thaliana AT1G71692 D 0.000
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.000
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.000
AMTR_s00071p00193200 Amborella trichopoda AMTR_s00071p00193200 I 0.000
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.000
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.000
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.000
Aquca_035_00266 Aquilegia coerulea Aquca_035_00266 I 0.000
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.000
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.000
BGIOSGA017110 Oryza indica BGIOSGA017110 I 0.000
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.000
Bo2g073010 Brassica oleracea Bo2g073010 I 0.000
Bo6g094120 Brassica oleracea Bo6g094120 I 0.000
Bo6g113110 Brassica oleracea Bo6g113110 I 0.000
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.000
Bra003919 Brassica rapa Bra003919 I 0.000
Bra007972 Brassica rapa Bra007972 I 0.000
Bra016128 Brassica rapa Bra016128 I 0.000
BRADI1G59250 Brachypodium distachyon BRADI1G59250 I 0.000
BRADI2G25090 Brachypodium distachyon BRADI2G25090 I 0.000
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.000
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.000
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.000
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.000
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.000
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.000
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.000
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.000
cassava3099.m1 Manihot esculenta cassava3099.m1 I 0.000
cassava38700.m1 Manihot esculenta cassava38700.m1 I 0.000
cassava40221.m1 Manihot esculenta cassava40221.m1 I 0.000
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.000
Ca_16423 Cicer arietinum Ca_16423 I 0.000
Ca_19954 Cicer arietinum Ca_19954 I 0.000
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.000
Ciclev10016427m.g Citrus clementina Ciclev10016427m.g I 0.000
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.000
Cla012709 Citrullus lanatus Cla012709 I 0.000
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.000
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.000
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.000
evm.TU.supercontig_3.196 Carica papaya evm.TU.supercontig_3.196 I 0.000
F775_05799 Aegilops tauschii F775_05799 I 0.000
F775_08627 Aegilops tauschii F775_08627 I 0.000
F775_26271 Aegilops tauschii F775_26271 I 0.000
F775_52406 Aegilops tauschii F775_52406 I 0.000
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.000
gene27105-v1.0-hybrid Fragaria vesca gene27105-v1.0-hybrid I 0.000
GLYMA08G06991 Glycine max GLYMA08G06991 I 0.000
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.000
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.000
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.000
GRMZM2G026223 Zea mays GRMZM2G026223 I 0.000
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.000
GRMZM2G070034 Zea mays GRMZM2G070034 I 0.000
GRMZM2G072582 Zea mays GRMZM2G072582 I 0.000
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.000
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.000
GRMZM2G148693 Zea mays GRMZM2G148693 I 0.000
GRMZM2G171365 Zea mays GRMZM2G171365 I 0.000
GSMUA_Achr10G10990_001 Musa acuminata GSMUA_Achr10G10990_001 I 0.000
GSMUA_Achr10G21480_001 Musa acuminata GSMUA_Achr10G21480_001 I 0.000
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.000
GSMUA_Achr11G19540_001 Musa acuminata GSMUA_Achr11G19540_001 I 0.000
GSMUA_Achr11G21460_001 Musa acuminata GSMUA_Achr11G21460_001 I 0.000
GSMUA_Achr1G03630_001 Musa acuminata GSMUA_Achr1G03630_001 I 0.000
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.000
GSMUA_Achr3G25280_001 Musa acuminata GSMUA_Achr3G25280_001 I 0.000
GSMUA_Achr5G20280_001 Musa acuminata GSMUA_Achr5G20280_001 I 0.000
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.000
GSMUA_Achr7G23690_001 Musa acuminata GSMUA_Achr7G23690_001 I 0.000
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.000
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.000
LPERR04G20730 Leersia perrieri LPERR04G20730 I 0.000
LPERR07G00480 Leersia perrieri LPERR07G00480 I 0.000
LPERR07G18670 Leersia perrieri LPERR07G18670 I 0.000
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.000
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.000
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.000
Lus10002763.g Linum usitatissimum Lus10002763.g I 0.000
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.000
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.000
MADS26 Oryza sativa OS08G0112700 D 0.000
MADS31 Oryza sativa OS04G0614100 I 0.000
MADS50 Oryza sativa OS03G0122600 D 0.000
MADS56 Oryza sativa OS10G0536100 I 0.000
MADS56 Oryza indica BGIOSGA033356 I 0.000
MDP0000135652 Malus domestica MDP0000135652 I 0.000
MDP0000144516 Malus domestica MDP0000144516 I 0.000
MDP0000179718 Malus domestica MDP0000179718 I 0.000
MDP0000192806 Malus domestica MDP0000192806 I 0.000
MDP0000193953 Malus domestica MDP0000193953 I 0.000
MDP0000316609 Malus domestica MDP0000316609 I 0.000
mgf005317m Mimulus guttatus mgf005317m I 0.000
mgf006616m Mimulus guttatus mgf006616m I 0.000
mgf008635m Mimulus guttatus mgf008635m I 0.000
mgf009713m Mimulus guttatus mgf009713m I 0.000
mgf011060m Mimulus guttatus mgf011060m I 0.000
mgf017448m Mimulus guttatus mgf017448m I 0.000
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.000
MLOC_61901 Hordeum vulgare MLOC_61901 D 0.000
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.000
OB03G11760 Oryza brachyantha OB03G11760 I 0.000
OB04G21020 Oryza brachyantha OB04G21020 I 0.000
OB08G11080 Oryza brachyantha OB08G11080 I 0.000
OB10G24040 Oryza brachyantha OB10G24040 I 0.000
OBART03G01800 Oryza barthii OBART03G01800 I 0.000
OBART04G13770 Oryza barthii OBART04G13770 I 0.000
OBART04G13800 Oryza barthii OBART04G13800 I 0.000
OBART04G25610 Oryza barthii OBART04G25610 I 0.000
OBART08G00930 Oryza barthii OBART08G00930 I 0.000
OBART10G16960 Oryza barthii OBART10G16960 I 0.000
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I 0.000
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.000
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.000
OGLUM04G25090 Oryza glumaepatula OGLUM04G25090 I 0.000
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.000
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.000
OLONG_010918 Oryza longistaminata OLONG_010918 I 0.000
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.000
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.000
OLONG_021245 Oryza longistaminata OLONG_021245 I 0.000
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.000
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.000
OMERI03G01730 Oryza meridionalis OMERI03G01730 I 0.000
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.000
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.000
OMERI04G20840 Oryza meridionalis OMERI04G20840 I 0.000
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.000
ONIVA03G01420 Oryza nivara ONIVA03G01420 I 0.000
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.000
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.000
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.000
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.000
OPUNC03G01630 Oryza punctata OPUNC03G01630 I 0.000
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.000
OPUNC04G22650 Oryza punctata OPUNC04G22650 I 0.000
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.000
OPUNC08G19670 Oryza punctata OPUNC08G19670 I 0.000
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.000
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.000
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.000
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I 0.000
ORGLA04G0222300 Oryza glaberrima ORGLA04G0222300 I 0.000
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.000
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.000
ORGLA12G0056500 Oryza glaberrima ORGLA12G0056500 I 0.000
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I 0.000
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.000
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.000
ORUFI04G26810 Oryza rufipogon ORUFI04G26810 I 0.000
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.000
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.000
Pavir.Ba03990 Panicum virgatum Pavir.Ba03990 I 0.000
Pavir.Bb00065 Panicum virgatum Pavir.Bb00065 I 0.000
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.000
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.000
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.000
Pavir.Ia02902 Panicum virgatum Pavir.Ia02902 I 0.000
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.000
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.000
Pavir.J22336 Panicum virgatum Pavir.J22336 I 0.000
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.000
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.000
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.000
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.000
PGSC0003DMG400005176 Solanum tuberosum PGSC0003DMG400005176 I 0.000
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.000
PGSC0003DMG400025525 Solanum tuberosum PGSC0003DMG400025525 I 0.000
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.000
PK19764.1 Cannabis sativa PK19764.1 I 0.000
PK26896.1 Cannabis sativa PK26896.1 I 0.000
Pm004239 Prunus mume Pm004239 I 0.000
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.000
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.000
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.000
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I 0.000
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.000
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.000
Q40591_TOBAC Nicotiana tabacum Q40591_TOBAC D 0.000
Q40882_PETHY Petunia x hybrida Q40882_PETHY D 0.000
Q41829_MAIZE Zea mays Q41829_MAIZE D 0.000
Q43616_PETHY Petunia x hybrida Q43616_PETHY D 0.000
Q9ATE8_PETHY Petunia x hybrida Q9ATE8_PETHY D 0.000
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.000
Q9FR84_MAIZE Zea mays Q9FR84_MAIZE D 0.000
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.000
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I 0.000
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.000
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.000
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.000
Sb01g030570 Sorghum bicolor Sb01g030570 I 0.000
Sb02g001090 Sorghum bicolor Sb02g001090 I 0.000
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.000
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.000
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.000
Si007187m.g Setaria italica Si007187m.g I 0.000
Si012632m.g Setaria italica Si012632m.g I 0.000
Si014419m.g Setaria italica Si014419m.g I 0.000
Si024640m.g Setaria italica Si024640m.g I 0.000
Si030802m.g Setaria italica Si030802m.g I 0.000
Si038257m.g Setaria italica Si038257m.g I 0.000
Si038299m.g Setaria italica Si038299m.g I 0.000
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.000
Solyc11g028020.1 Solanum lycopersicum Solyc11g028020.1 I 0.000
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.000
STK Vitis vinifera VIT_18s0041g01880 I 0.000
TCM_015049 Theobroma cacao TCM_015049 I 0.000
TCM_036568 Theobroma cacao TCM_036568 I 0.000
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.000
Traes_2AL_20C2D79E1 Triticum aestivum Traes_2AL_20C2D79E1 I 0.000
Traes_2BL_26F24E716 Triticum aestivum Traes_2BL_26F24E716 I 0.000
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.000
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.000
Traes_2DL_903A29CBA Triticum aestivum Traes_2DL_903A29CBA I 0.000
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.000
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I 0.000
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.000
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.000
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.000
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.000
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.000
TRIUR3_21876 Triticum urartu TRIUR3_21876 I 0.000