Thhalv10001538m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10001538m.g T143523_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZAT4
M01168_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Lambert et al.(2019)
pTH11142
0.803 0.978
ZAT9
M06817_2.00
Arabidopsis thaliana
YTACTWHH

DDWAGTAR
Dap-seq
OMalley et al.(2016)
At3g60580_col_a
0.803 0.913
ZAT1
M01167_2.00
Arabidopsis thaliana
NHRCTNN

NNAGYDN
PBM
Lambert et al.(2019)
pTH10246
0.778 0.891
ZAT10
M01852_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7255
0.776 0.696
ZAT10
M06799_2.00
Arabidopsis thaliana
WSHHCACT

AGTGDDSW
Dap-seq
OMalley et al.(2016)
STZ_colamp_a
0.776 0.696
ZAT10
M06800_2.00
Arabidopsis thaliana
YWSHNHCASTN

NASTGDNDSWR
Dap-seq
OMalley et al.(2016)
STZ_col
0.776 0.696
AZF2
M01854_2.00
Arabidopsis thaliana
NASTRNN

NNYASTN
PBM
Weirauch et al.(2014)
pTH8258
0.775 0.696
ZAT6
M00861_2.00
Arabidopsis thaliana
NNHRSTN

NASYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT6
0.775 0.674
AZF1
M01860_2.00
Arabidopsis thaliana
NWSYDNN

NNHRSWN
PBM
Weirauch et al.(2014)
pTH7163
0.766 0.717
AZF1
M06826_2.00
Arabidopsis thaliana
WCACTVWCWNH

DNWGWBAGTGW
Dap-seq
OMalley et al.(2016)
AZF1_colamp_a
0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10001538m C2H2 ZF 213 235
Thhalv10001538m C2H2 ZF 266 288

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra000372 Brassica rapa Bra000372 I 0.827
Bra040325 Brassica rapa Bra040325 I 0.827
Bo3g037560 Brassica oleracea Bo3g037560 I 0.827
Bo4g195370 Brassica oleracea Bo4g195370 I 0.827
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.803
ZAT4 Arabidopsis thaliana AT2G45120 D 0.803
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.803
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.803
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.803
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.803
ZAT9 Arabidopsis thaliana AT3G60580 D 0.803
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.803
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.799
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.799
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.799
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.798
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.798
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.797
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.797
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.797
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.797
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.797
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.797
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.797
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.796
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.796
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.794
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.792
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.788
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.788
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.788
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.788
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.788
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.788
Ca_23672 Cicer arietinum Ca_23672 I 0.788
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.784
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.782
Bo6g077190 Brassica oleracea Bo6g077190 I 0.779
Bo8g095300 Brassica oleracea Bo8g095300 I 0.779
Bra007545 Brassica rapa Bra007545 I 0.779
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.779
Bo4g104940 Brassica oleracea Bo4g104940 I 0.779
Bra014483 Brassica rapa Bra014483 I 0.779
Bra003422 Brassica rapa Bra003422 I 0.779
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.779
ZAT1 Arabidopsis thaliana AT1G02030 D 0.778
Bostr.5325s0123 Boechera stricta Bostr.5325s0123 I 0.778
POPTR_0001s00800 Populus trichocarpa POPTR_0001s00800 I 0.777
Bo7g048650 Brassica oleracea Bo7g048650 I 0.776
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.776
SapurV1A.1544s0070 Salix purpurea SapurV1A.1544s0070 I 0.776
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.776
Bo3g142840 Brassica oleracea Bo3g142840 I 0.776
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.776
ZAT10 Arabidopsis thaliana AT1G27730 D 0.776
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.776
TCM_000780 Theobroma cacao TCM_000780 I 0.776
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.776
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.776
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.776
cassava21316.m1 Manihot esculenta cassava21316.m1 I 0.776
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.776
cassava32957.m1 Manihot esculenta cassava32957.m1 I 0.776
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.776
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.776
SapurV1A.1944s0060 Salix purpurea SapurV1A.1944s0060 I 0.776
mgf006006m Mimulus guttatus mgf006006m I 0.776
Bra010922 Brassica rapa Bra010922 I 0.776
30170.m013751 Ricinus communis 30170.m013751 I 0.776
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.775
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.775
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.775
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.775
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.775
AC211702.2_FG002 Zea mays AC211702.2_FG002 I 0.775
TCM_007214 Theobroma cacao TCM_007214 I 0.775
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.775
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.775
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.775
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.775
Ca_18364 Cicer arietinum Ca_18364 I 0.775
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.775
28152.m000908 Ricinus communis 28152.m000908 I 0.775
Pm005390 Prunus mume Pm005390 I 0.775
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.775
Ca_01586 Cicer arietinum Ca_01586 I 0.775
Pm021284 Prunus mume Pm021284 I 0.775
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.775
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.775
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.775
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.775
TCM_034720 Theobroma cacao TCM_034720 I 0.775
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.775
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.775
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.775
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.775
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.775
Bo5g113850 Brassica oleracea Bo5g113850 I 0.775
PK10188.1 Cannabis sativa PK10188.1 I 0.775
Bo1g113530 Brassica oleracea Bo1g113530 I 0.775
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.775
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.775
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.775
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.775
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.775
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.775
Bra009464 Brassica rapa Bra009464 I 0.775
Bo9g181170 Brassica oleracea Bo9g181170 I 0.775
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.775
Bra018817 Brassica rapa Bra018817 I 0.775
Bra022436 Brassica rapa Bra022436 I 0.775
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.775
Bra038219 Brassica rapa Bra038219 I 0.775
Bra033666 Brassica rapa Bra033666 I 0.775
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.775
MDP0000762756 Malus domestica MDP0000762756 I 0.775
ZAT6 Arabidopsis thaliana AT5G04340 D 0.775
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.775
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.775
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.775
AZF2 Arabidopsis thaliana AT3G19580 D 0.775
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.775
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.775
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.775
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.775
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.775
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.775
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.775
MDP0000319225 Malus domestica MDP0000319225 I 0.775
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.775
MDP0000573176 Malus domestica MDP0000573176 I 0.775
MDP0000198015 Malus domestica MDP0000198015 I 0.775
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.775
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.775
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.775
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.775
Bo7g065200 Brassica oleracea Bo7g065200 I 0.775
30174.m008818 Ricinus communis 30174.m008818 I 0.773
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.773
PGSC0003DMG400024550 Solanum tuberosum PGSC0003DMG400024550 I 0.773
Solyc03g115450.1 Solanum lycopersicum Solyc03g115450.1 I 0.773
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.772
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.772
Ciclev10007101m.g Citrus clementina Ciclev10007101m.g I 0.772
30147.m014242 Ricinus communis 30147.m014242 I 0.772
AZF3 Arabidopsis lyrata scaffold_800768.1 I 0.769
AZF3 Arabidopsis thaliana AT5G43170 I 0.769
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I 0.769
GSMUA_Achr11G21040_001 Musa acuminata GSMUA_Achr11G21040_001 I 0.768
GSMUA_AchrUn_randomG03030_001 Musa acuminata GSMUA_AchrUn_randomG03030_001 I 0.768
Bra031834 Brassica rapa Bra031834 I 0.766
Bra037845 Brassica rapa Bra037845 I 0.766
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.766
Bra029985 Brassica rapa Bra029985 I 0.766
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I 0.766
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.766
Bra012914 Brassica rapa Bra012914 I 0.766
Bo9g019120 Brassica oleracea Bo9g019120 I 0.766
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.766
Bo1g081350 Brassica oleracea Bo1g081350 I 0.766
Bo2g168030 Brassica oleracea Bo2g168030 I 0.766
AZF1 Arabidopsis thaliana AT5G67450 D 0.766
Thhalv10009894m.g Eutrema salsugineum Thhalv10009894m.g I 0.765
OB03G42170 Oryza brachyantha OB03G42170 I 0.765
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.765
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.764
mgf021094m Mimulus guttatus mgf021094m I 0.763
ORUFI04G22610 Oryza rufipogon ORUFI04G22610 I 0.762
BRADI3G33100 Brachypodium distachyon BRADI3G33100 I 0.762
GRMZM2G170520 Zea mays GRMZM2G170520 I 0.762
OS04G0552700 Oryza sativa OS04G0552700 I 0.762
OLONG_016061 Oryza longistaminata OLONG_016061 I 0.762
Si010615m.g Setaria italica Si010615m.g I 0.762
BGIOSGA016894 Oryza indica BGIOSGA016894 I 0.762
PGSC0003DMG400020929 Solanum tuberosum PGSC0003DMG400020929 I 0.762
ORGLA04G0180800 Oryza glaberrima ORGLA04G0180800 I 0.762
OPUNC04G18700 Oryza punctata OPUNC04G18700 I 0.762
OMERI04G17450 Oryza meridionalis OMERI04G17450 I 0.762
OBART04G21020 Oryza barthii OBART04G21020 I 0.762
ONIVA04G19260 Oryza nivara ONIVA04G19260 I 0.762
GSMUA_Achr4G26920_001 Musa acuminata GSMUA_Achr4G26920_001 I 0.762
Pavir.Ab02618 Panicum virgatum Pavir.Ab02618 I 0.762
OB04G28040 Oryza brachyantha OB04G28040 I 0.762
GSMUA_Achr1G01550_001 Musa acuminata GSMUA_Achr1G01550_001 I 0.762
GSMUA_Achr4G12160_001 Musa acuminata GSMUA_Achr4G12160_001 I 0.762
Cla001400 Citrullus lanatus Cla001400 I 0.761
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.760
Cucsa.395710 Cucumis sativus Cucsa.395710 I 0.759
Cla022966 Citrullus lanatus Cla022966 I 0.759
mgf017082m Mimulus guttatus mgf017082m I 0.758
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.756
TCM_014903 Theobroma cacao TCM_014903 I 0.756