CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10007411m.g
(
Eutrema salsugineum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Thhalv10007411m.g
T143538_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
STOP1
M06801_2.00
Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG
Dap-seq
OMalley et al.(2016)
STOP1_col_a
0.827
1.000
STOP1
M06802_2.00
Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY
Dap-seq
OMalley et al.(2016)
STOP1_colamp_a
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10007411m
C2H2 ZF
343
365
FTCSRCHTKKFSVIADLKTHEKH
Thhalv10007411m
C2H2 ZF
364
395
KHCGKNKWLCSCGTTFSRKDKLFGHIALFQGH
Thhalv10007417m
C2H2 ZF
343
365
FTCSRCHTKKFSVIADLKTHEKH
Thhalv10007417m
C2H2 ZF
364
395
KHCGKNKWLCSCGTTFSRKDKLFGHIALFQGH
Links
Other
C2H2 ZF
family TFs
Other
Eutrema salsugineum
TFs
79 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy